Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0918
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13644-3|AAB52677.1|  230|Caenorhabditis elegans Ubiquitin e2 (c...    30   2.0  
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    29   4.6  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    28   6.1  

>U13644-3|AAB52677.1|  230|Caenorhabditis elegans Ubiquitin e2
           (conjugating enzyme)variant protein 2 protein.
          Length = 230

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 748 SPWKSIGE*XLSYEFH*KNLIPRLRXFETPVH 653
           SPW+  GE  +S  FH   +IP +  F+TP+H
Sbjct: 81  SPWEG-GEYEVSVNFHKWPIIPPICEFKTPLH 111


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +1

Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRERGPAARC 513
           P PA     PA     A   A+PP PV  A    G AA C
Sbjct: 76  PLPAPVFAAPAPAPVFAAPFAAPPAPVIAAQPALGCAAPC 115


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 397 PPADSVVLPAATDAVATRDASPPPP 471
           PP    V+ A+  A A RD  PPPP
Sbjct: 182 PPPQPPVMTASAAAAAYRDRLPPPP 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,398,138
Number of Sequences: 27780
Number of extensions: 307868
Number of successful extensions: 1036
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)