Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0917
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 34 0.087
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 34 0.087
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 31 1.1
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 31 1.1
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 30 1.4
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 30 1.4
At1g61080.1 68414.m06877 proline-rich family protein 30 1.9
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 2.5
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 2.5
At2g36540.1 68415.m04482 NLI interacting factor (NIF) family pro... 29 3.3
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 29 4.3
At2g29220.1 68415.m03551 lectin protein kinase, putative similar... 29 4.3
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 5.7
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 25 6.3
At5g09750.1 68418.m01129 basic helix-loop-helix (bHLH) family pr... 28 7.6
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 28 7.6
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 7.6
At2g48140.1 68415.m06026 protease inhibitor/seed storage/lipid t... 28 7.6
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 27 10.0
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica... 27 10.0
At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing ... 27 10.0
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b... 27 10.0
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 34.3 bits (75), Expect = 0.087
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 716 KYEFPLEKIDTRLRDSNHXCIATYECHRTTYPLXHDFKLR-GLTYENSF 573
+Y P++ DT L S H I + +R + HD K R GL YE+SF
Sbjct: 88 EYGLPVQVRDTALNISTHDSIPKSDVNREFFAEEHDRKTRAGLDYESSF 136
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 34.3 bits (75), Expect = 0.087
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 716 KYEFPLEKIDTRLRDSNHXCIATYECHRTTYPLXHDFKLR-GLTYENSF 573
+Y P++ DT L S H I + +R + HD K R GL YE+SF
Sbjct: 88 EYGLPVQVRDTALNISTHDSIPKSDVNREYFAEEHDRKARAGLDYESSF 136
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 367 HSFKLARVR-PPPADSVVLPAATDAVATRDASPPPPVATATR 489
+SF+L +V+ PPP+ S AT +T S P+A +TR
Sbjct: 15 YSFELEKVKSPPPSSSTTTTRATSPSSTISESSNSPLAISTR 56
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 367 HSFKLARVR-PPPADSVVLPAATDAVATRDASPPPPVATATR 489
+SF+L +V+ PPP+ S AT +T S P+A +TR
Sbjct: 15 YSFELEKVKSPPPSSSTTTTRATSPSSTISESSNSPLAISTR 56
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRDXGPP 504
PPP S P A+PPPP + GPP
Sbjct: 386 PPPPPSAAAPPPPPPPKKGPAAPPPPPPPGKKGAGPP 422
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 355 SLDRHSFKLARVRPPPADSVVLPAATDAVATRD--ASPP-PPVATATRDXGPPLRAVVGA 525
S ++ S+ A + PPP + + P +A R A+PP PP TA PPL G
Sbjct: 214 SAEKESY--APLPPPPGRAALPPPPPLPMAVRKGVAAPPLPPPGTAALPPPPPLPMAAGK 271
Query: 526 DAAA 537
AA
Sbjct: 272 GVAA 275
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRDXGPP 504
PPP +V P T A PPPP T+ PP
Sbjct: 528 PPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPP 564
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRDXGPPL 507
PPP S + A ASPPPPVA+ PP+
Sbjct: 71 PPPVSSPPPASPPPATPPPVASPPPPVASPPPATPPPV 108
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRDXGPPL 507
PPP S + A ASPPPPVA+ PP+
Sbjct: 71 PPPVSSPPPASPPPATPPPVASPPPPVASPPPATPPPV 108
>At2g36540.1 68415.m04482 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 249
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +1
Query: 232 MTTGTRECLTSIRKA--NHFFCIF-KDASLIFECFRF*VYFDKSSLDRHSFKLARVRPPP 402
+ TG REC S K N + +F KD S +F+CF+ + +D +K R P
Sbjct: 122 IVTGPRECTDSGYKTLENRYKPLFFKDLSKVFKCFKGFSASNTIFIDDEPYKALR---NP 178
Query: 403 ADSVVLPAATDAVATRD 453
++ + P + DA +D
Sbjct: 179 DNTGLFPMSYDASNIKD 195
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 196 FNLRTIPEHQLHMTTGTRECLTSIRKANHFFCIFKDASLIFECF 327
F++ ++P +L + +RE L + K N+F IFK A L+ F
Sbjct: 516 FSVYSLPNWELFIACISREYL--LMKRNYFVYIFKTAQLVMAAF 557
>At2g29220.1 68415.m03551 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 627
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 406 DSVVLPAATDAVATRDASPPPPVATATRDXGPPLRAVVGADA 531
D LP+ D T SP PPV+T + L +V A A
Sbjct: 271 DITKLPSLPDPPPTLSPSPSPPVSTEKKSNNTMLIIIVAASA 312
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRDXGPP 504
PPP S P + SPPPPVA+ PP
Sbjct: 553 PPPVHSPPPPVYSSPPPPHVYSPPPPVASPPPPSPPP 589
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 25.0 bits (52), Expect(2) = 6.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRDASPPPPV 474
PPPA + PA T + PPPP+
Sbjct: 47 PPPALPSLPPAVFSPPPTVSSPPPPPL 73
Score = 21.4 bits (43), Expect(2) = 6.3
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +1
Query: 451 DASPPPPVATATRDXGPP 504
D+SPPPP PP
Sbjct: 74 DSSPPPPPDLTPPPSSPP 91
>At5g09750.1 68418.m01129 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 224
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +1
Query: 304 ASLIFECFRF*VYFDKSSLDRHSFKLARVRPPPADSVVLPAATDAVATRDASPPPP 471
AS++ E R+ V F K + + PPP D A+ AV T SPPPP
Sbjct: 161 ASMLDEAIRY-VKFLKRQIRLLNNNTGYTPPPPQDQ-----ASQAVTTSWVSPPPP 210
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 424 AATDAVATRDASPPPPVATATRDXGPPL 507
+AT A+PPPP AT T PP+
Sbjct: 96 SATVTSPAESAAPPPPPATTTPSPPPPV 123
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRDXGPP 504
PPP + +P+ T V+ +P P V + T PP
Sbjct: 100 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 136
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRDXGPP 504
PPP + +P+ T V+ +P P V + T PP
Sbjct: 118 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 154
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 394 PPPADSVVLPAATDAVATRD-ASPPPPVA 477
PPP + +P+ T V T SPPPPV+
Sbjct: 154 PPPTPTPSVPSPTPPVPTDPMPSPPPPVS 182
>At2g48140.1 68415.m06026 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 200
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 388 VRPPPADSVVLPAATDAVATRDASPPPPVATATRDXGPPLRA 513
+ PPP S P A+ A T P P A GP ++
Sbjct: 124 IAPPPQVSAFSPGASKAAGTTPTQAPAPDTPADGPTGPTTKS 165
>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
low similarity to kinase [Gallus gallus] GI:1370092;
contains Pfam profile PF00439: Bromodomain
Length = 678
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 460 PPPPVATATRDXGPP 504
PPPPV TRD PP
Sbjct: 410 PPPPVIEITRDPSPP 424
>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
to gi_3883126_gb_AAC77826
Length = 135
Score = 27.5 bits (58), Expect = 10.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 388 VRPPPADSVVLPAATDAVATRDASPPPPVATATRDXGPPLRAVVGAD 528
V PP + PAAT A AT PPP AT PP A AD
Sbjct: 40 VATPPPVATPPPAATPAPAT-----PPPAATPAPATTPPSVAPSPAD 81
>At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing
protein (ADOF2) identical to Dof zinc finger protein
ADOF2 GI:3608263 from [Arabidopsis thaliana]; identical
to cDNA adof2 mRNA for Dof zinc finger protein
GI:3608262; contains Pfam profile PF02701: Dof domain,
zinc finger
Length = 204
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/53 (24%), Positives = 21/53 (39%)
Frame = -2
Query: 522 SNNSTERRAXVARRCSDWWRRAGVARRYSVGGGGQHYTIGRRWSDSCELKAMS 364
+N + + + C +W + G R VGGG + R S S + S
Sbjct: 45 NNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNATKRSTSSSSSASSPS 97
>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
boundaries domain protein 13 (LBD13) identical to LOB
DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
Length = 268
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 355 SLDRHSFKLARVRPPPADSVVLPAATDAVATRDASPP-PPVA 477
S D+H+ A + PPP P ++++ A PP PPV+
Sbjct: 180 SCDQHALASAILLPPPPPPPPTPRPPRLLSSQPAPPPTPPVS 221
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,408,238
Number of Sequences: 28952
Number of extensions: 281111
Number of successful extensions: 1059
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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