Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0916
         (299 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   0.53 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   3.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       19   8.7  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    19   8.7  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.4 bits (48), Expect = 0.53
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 48  FVHLSKQKQTQDKMCDRKAVIKNADMSEEMQQD 146
           F+ + KQK  +D   D+KA+ K     E+ ++D
Sbjct: 68  FIKMVKQKHKKDIRADKKALQKLRREVEKAKRD 100


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 277 EPKLRPTINVQVGLYFLXN 221
           EP LRP + ++  L+ L N
Sbjct: 107 EPNLRPKLLLKHNLFLLDN 125


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -3

Query: 99  CDHTSC 82
           CDHT+C
Sbjct: 148 CDHTTC 153


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +2

Query: 17  ISGYQNLNVRICSFIE 64
           +  +QNL+ +IC+ I+
Sbjct: 209 VKEHQNLHNKICNLID 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,395
Number of Sequences: 336
Number of extensions: 1100
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)