Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0916
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    67   6e-13
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   1.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   2.4  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    24   4.2  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   5.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   5.5  
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    23   7.3  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 66.9 bits (156), Expect = 6e-13
 Identities = 32/66 (48%), Positives = 40/66 (60%)
 Frame = +3

Query: 102 AVIKNADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXXYNPTWTLIVGRNFGSY 281
           AVIK  DMSE+MQQ+A+  A QA+E                   ++PTW  IVGRNFGS+
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSF 61

Query: 282 VTHETR 299
           VTHE+R
Sbjct: 62  VTHESR 67


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 174 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 61
           ++L L + QH+   L SC ++L +L  H  CL  F++ S
Sbjct: 39  KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 176 LERLSCTVNSILLHLFAHVSILYDCF 99
           LE L+  +N  +  +FA++ +  DCF
Sbjct: 565 LEFLNSCINRCISRVFAYLDVCVDCF 590


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 148 ASCCISSLMSAFFMTALRSHILSWVCFC 65
           A+ C+SSL+       L    L W+C C
Sbjct: 161 AAVCVSSLVGISMDDPLFEGTLQWLCKC 188


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 182 KFLERLSCTVNSILLHLFAHVSILYDC 102
           KFL   SC   S L H FA+ SI   C
Sbjct: 272 KFLASCSCFFLSALFHDFAYWSISGRC 298


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 191 FN-VKFLERLSCTVNSILLHLFAHVSILYDCFAITHLVLGL 72
           FN V  L+R+S   + + LHL + +     CF++  +  GL
Sbjct: 258 FNFVILLKRISIGDSQLFLHLHSRIVQTLCCFSLNFIYHGL 298


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 19  LRLSKS*RENLFIYRSKNKPKTRCVIAKQS 108
           +RL  +   ++F Y   N P   C +AKQ+
Sbjct: 171 IRLGLALNFSVFYYEILNSPDRACYLAKQA 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,116,403
Number of Sequences: 5004
Number of extensions: 17177
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)