Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0916
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           44   2e-05
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     38   0.001
01_06_0783 + 31975261-31975398,31975583-31975726                       37   0.003
02_04_0361 - 22359278-22359439,22362291-22362728                       36   0.004
01_05_0324 - 20946774-20946935,20947301-20947780                       36   0.008
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672...    27   3.6  
07_03_1500 + 27001842-27002058,27002144-27002283,27002458-270025...    26   4.7  
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97...    26   4.7  

>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 23/58 (39%), Positives = 28/58 (48%)
 Frame = +3

Query: 99  KAVIKNADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXXYNPTWTLIVGRNF 272
           K  +K+ADM EEM+Q+A D A  A E                   + PTW  IVGRNF
Sbjct: 46  KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 22/64 (34%), Positives = 29/64 (45%)
 Frame = +3

Query: 87  MCDRKAVIKNADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXXYNPTWTLIVGR 266
           +   K  IK+A+M EEM+Q+A D    A E                   + PTW  IVG 
Sbjct: 54  LAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIKEFDKN-HGPTWHCIVGH 112

Query: 267 NFGS 278
           NFG+
Sbjct: 113 NFGT 116


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 87  MCDRKAVIKNADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXX--YNPTWTLIV 260
           M + KA++++ DM  +MQ  A+  A +AL+                     + P W  +V
Sbjct: 1   MLEGKAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVV 60

Query: 261 GRNFGSYVTH 290
           G +FG Y TH
Sbjct: 61  GASFGCYFTH 70


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +3

Query: 63  KQKQTQDKMCDRKAVIK--NADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXX- 233
           K+K+ +    +RK  ++   ADM   MQ+ AV  A  A+                     
Sbjct: 91  KEKEMEKGKEERKVSVRVRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDA 150

Query: 234 -YNPTWTLIVGRNFGSYVTH 290
            Y P W  IVG  FGSYVTH
Sbjct: 151 TYGPAWHCIVGTGFGSYVTH 170


>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 117 ADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXX--YNPTWTLIVGRNFGSYVTH 290
           ADMS  MQ  A  CA ++ +                     Y PTW  IVG ++GS+VTH
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFSSRQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVTH 184


>04_04_0788 +
           28064684-28066584,28066692-28066815,28066908-28067285,
           28067286-28067488,28067615-28067897
          Length = 962

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 134 LFAHVSILYDCFAITHLVL 78
           LF  +S LYDCF ++ LVL
Sbjct: 777 LFIVLSALYDCFTLSDLVL 795


>07_03_1500 +
           27001842-27002058,27002144-27002283,27002458-27002549,
           27002680-27002776,27002871-27002951,27003031-27003263,
           27003876-27004070,27004149-27004239,27004324-27004446,
           27004542-27004692,27005060-27005262
          Length = 540

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 93  DRKAVIKNADMSEEMQQDAVD 155
           D +A + +AD+ EE +QDAVD
Sbjct: 409 DVRADVIHADLDEEQRQDAVD 429


>06_01_0125 +
           970746-970967,971126-971226,971897-972026,972108-972333,
           972400-972502,972519-972594,972710-973333
          Length = 493

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 66  QKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALE 176
           Q + ++K C  KA +   + S + +QD +D   Q  E
Sbjct: 259 QHRKRNKFCGHKAAVDRLNESGKNEQDRIDDVVQMYE 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,832,612
Number of Sequences: 37544
Number of extensions: 101682
Number of successful extensions: 249
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)