Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0916
(299 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light ch... 95 6e-21
AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical... 35 0.009
Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical pr... 29 0.47
AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical ... 28 1.1
AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical ... 26 4.4
AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical ... 26 4.4
Z81575-2|CAB04639.1| 339|Caenorhabditis elegans Hypothetical pr... 26 5.8
EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein. 25 7.6
AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical... 25 7.6
AF025468-7|AAB71044.1| 248|Caenorhabditis elegans Hypothetical ... 25 7.6
>U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light chain
protein 1 protein.
Length = 89
Score = 95.5 bits (227), Expect = 6e-21
Identities = 45/71 (63%), Positives = 49/71 (69%)
Frame = +3
Query: 87 MCDRKAVIKNADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXXYNPTWTLIVGR 266
M DRKAVIKNADMS++MQQDA+DCATQALE YNPTW IVGR
Sbjct: 1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 267 NFGSYVTHETR 299
NFGSYVTHET+
Sbjct: 61 NFGSYVTHETK 71
>AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical
protein Y73B6BL.43 protein.
Length = 186
Score = 35.1 bits (77), Expect = 0.009
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 102 AVIKNADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXXYNPTWTLIVGRNFGSY 281
A ++++ M M+Q+A A +++ Y P W I G++FGS+
Sbjct: 58 ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSF 117
Query: 282 VTHE 293
VT E
Sbjct: 118 VTFE 121
>Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical
protein M18.2 protein.
Length = 90
Score = 29.5 bits (63), Expect = 0.47
Identities = 15/69 (21%), Positives = 26/69 (37%)
Frame = +3
Query: 87 MCDRKAVIKNADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXXYNPTWTLIVGR 266
M + K +K DM + + + +A + TW +I G+
Sbjct: 1 MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGK 60
Query: 267 NFGSYVTHE 293
FGS V++E
Sbjct: 61 CFGSRVSYE 69
>AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical
protein F55A3.1 protein.
Length = 958
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -1
Query: 218 FLDECSYXLFNVKFLERLSCTVNSILLHLFAH--VSILYDCFAITHLVLGLFLLR 60
++D C+ LFN+ +R++ + + +F H V ++Y ++ + ++L +LR
Sbjct: 520 WMDVCTLPLFNITLSQRIATFATAPFMSIFLHWMVGMVYVFYSASFVILLREILR 574
>AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical
protein Y10G11A.2b protein.
Length = 129
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 234 YNPTWTLIVGRNFGSYV 284
Y W +VGRNFGS++
Sbjct: 94 YGGHWQCVVGRNFGSHL 110
>AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical
protein Y10G11A.2a protein.
Length = 111
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 234 YNPTWTLIVGRNFGSYV 284
Y W +VGRNFGS++
Sbjct: 76 YGGHWQCVVGRNFGSHL 92
>Z81575-2|CAB04639.1| 339|Caenorhabditis elegans Hypothetical
protein R08H2.2 protein.
Length = 339
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 199 MXFSMLNFSSA*VAQSTASCCIS 131
M +S+L+F+S +A ST + CIS
Sbjct: 55 MVYSILSFTSGMMAHSTETSCIS 77
>EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein.
Length = 801
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 199 MXFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCF 68
+ FS + S + VA++ CI + F+ A +++++ CF
Sbjct: 201 LCFSKMKDSRSIVARAAQLVCIDAFRRKFWRDARTANVIAQACF 244
>AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical
protein Y39B6A.14 protein.
Length = 801
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 199 MXFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCF 68
+ FS + S + VA++ CI + F+ A +++++ CF
Sbjct: 201 LCFSKMKDSRSIVARAAQLVCIDAFRRKFWRDARTANVIAQACF 244
>AF025468-7|AAB71044.1| 248|Caenorhabditis elegans Hypothetical
protein T27A1.3 protein.
Length = 248
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 188 NVKFLERLSCTVNSILLHLFAHVSILYDCFAITHLVLGL 72
N K +L C L +++SIL D F+I H+ L +
Sbjct: 141 NYKKENKLPCMPYKTSQELISYLSILNDSFSIDHVDLAI 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,243,691
Number of Sequences: 27780
Number of extensions: 100657
Number of successful extensions: 280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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