Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0916
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   3.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   4.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   5.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   5.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   5.7  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 173 ERLSCTVNSILLHLFAH 123
           ER+ C+ NS++ H++ +
Sbjct: 42  ERVYCSRNSLMTHIYTY 58


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 51   VHLSKQKQTQDKMC 92
            +H ++ K+T DK+C
Sbjct: 1689 IHRTQVKETDDKIC 1702



 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 197  HSCIHQERIXQ 229
            H CI QER  Q
Sbjct: 1648 HDCIRQERTQQ 1658


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 291 RVSHTSQNYXPRSMSR*DCI 232
           R  HT+ NY   S++  DC+
Sbjct: 74  RYLHTATNYFVTSLAFADCL 93


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = -1

Query: 185 VKFLERLSCTVNSILLHLFAHVSILYDCFAITHLV 81
           V+FL++   ++    L++   ++++Y    +T LV
Sbjct: 35  VEFLQQEDSSIRRDPLYIVLPITVIYAVIFVTGLV 69


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 94  SHILSWVC 71
           SH+L W+C
Sbjct: 528 SHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 94  SHILSWVC 71
           SH+L W+C
Sbjct: 581 SHVLGWLC 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,233
Number of Sequences: 438
Number of extensions: 1159
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)