Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0916
(299 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15930.1 68417.m02419 dynein light chain, putative similar to... 62 7e-11
At4g27360.1 68417.m03927 dynein light chain, putative similar to... 42 8e-05
At1g52250.1 68414.m05895 dynein light chain type 1 family protei... 38 0.001
At1g23220.1 68414.m02904 dynein light chain type 1 family protei... 37 0.002
At5g20110.1 68418.m02394 dynein light chain, putative similar to... 37 0.003
At3g16120.1 68416.m02036 dynein light chain, putative similar to... 36 0.005
At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid t... 27 2.3
At5g35370.1 68418.m04204 lectin protein kinase family protein co... 25 7.1
At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak ... 25 7.1
At3g55450.1 68416.m06158 protein kinase, putative similar to pro... 25 9.4
At2g39660.1 68415.m04864 protein kinase, putative similar to pro... 25 9.4
>At4g15930.1 68417.m02419 dynein light chain, putative similar to
dynein light chain 2 [Mus musculus] GI:15545995;
contains Pfam profile PF01221: Dynein light chain type 1
Length = 103
Score = 62.1 bits (144), Expect = 7e-11
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = +3
Query: 96 RKAVIKNADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXXYNPTWTLIVGRNFG 275
++AVIK+ADM ++MQ++A++ A A E + TW IVGRNFG
Sbjct: 18 KRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFG 77
Query: 276 SYVTHET 296
SYVTHET
Sbjct: 78 SYVTHET 84
>At4g27360.1 68417.m03927 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 103
Score = 41.9 bits (94), Expect = 8e-05
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 87 MCDRKAVIKNADMSEEMQQDAVDCATQALE--XXXXXXXXXXXXXXXXXXXYNPTWTLIV 260
M + KAV+ + DM + M++DA+ A++AL+ Y W IV
Sbjct: 1 MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60
Query: 261 GRNFGSYVTH 290
G +FGS+VTH
Sbjct: 61 GTHFGSFVTH 70
>At1g52250.1 68414.m05895 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 94
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 87 MCDRKAVIKNADMSEEMQQDAVDCATQALE--XXXXXXXXXXXXXXXXXXXYNPTWTLIV 260
M + KA+++++DM +MQ A+ A+QAL+ Y W +V
Sbjct: 1 MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60
Query: 261 GRNFGSYVTH 290
G NFG + TH
Sbjct: 61 GSNFGCFFTH 70
>At1g23220.1 68414.m02904 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 129
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Frame = +3
Query: 51 VHLSKQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXX 230
+ K K+ QD+ + ++ +DM Q A + + L
Sbjct: 19 IQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKD 78
Query: 231 X---YNPTWTLIVGRNFGSYVTHET 296
Y P W IVG +FGSYVTH T
Sbjct: 79 FDSAYGPAWHCIVGTSFGSYVTHST 103
>At5g20110.1 68418.m02394 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 209
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +3
Query: 117 ADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXX--YNPTWTLIVGRNFGSYVTH 290
ADM MQ A CA L+ Y P W IVG +FGS+VTH
Sbjct: 122 ADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTH 181
Query: 291 ET 296
T
Sbjct: 182 ST 183
>At3g16120.1 68416.m02036 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 93
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 87 MCDRKAVIKNADMSEEMQQDAVDCATQALEXXXXXXXXXXXXXXXXXXX--YNPTWTLIV 260
M + KA ++ DM +MQ A+ A+Q+L+ Y W +V
Sbjct: 1 MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60
Query: 261 GRNFGSYVTH 290
G NFG + TH
Sbjct: 61 GTNFGCFFTH 70
>At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid
transfer protein (LTP)-related similar to geranyl
diphosphate synthase large subunit [Mentha x piperita]
GI:6449052
Length = 205
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2
Query: 223 NSFLMNAAMXFSML--NFSSA*VAQSTASCCISSLMS 119
NSFL++AA+ FS+L N ++ +AQ C S L S
Sbjct: 4 NSFLISAALIFSLLSSNSPTSILAQINTPCSPSMLSS 40
>At5g35370.1 68418.m04204 lectin protein kinase family protein
contains Pfam domains, PF01453: Lectin (probable mannose
binding) and PF00069: Protein kinase domain
Length = 870
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 289 CVTYEPKLRPTINVQVGLY 233
CV EP LRPT+ VG++
Sbjct: 783 CVHEEPALRPTMAAVVGMF 801
>At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 242
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 149 SILLHLFAHVSILYDCFAITHLVLGLF 69
S++ + F+ +S+LY CF + H V L+
Sbjct: 181 SVIGNWFSFLSLLYICFVLIHTVPMLY 207
>At3g55450.1 68416.m06158 protein kinase, putative similar to
protein kinase APK1B [Arabidopsis thaliana]
SWISS-PROT:P46573
Length = 389
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 295 VSCVTYEPKLRPTIN 251
V C+++EPK RPT++
Sbjct: 324 VQCLSFEPKSRPTMD 338
>At2g39660.1 68415.m04864 protein kinase, putative similar to
protein kinase gi|166809|gb|AAA18853
Length = 395
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 295 VSCVTYEPKLRPTIN 251
V C+++EPK RPT++
Sbjct: 329 VQCLSFEPKSRPTMD 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,745,386
Number of Sequences: 28952
Number of extensions: 87891
Number of successful extensions: 252
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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