Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0915
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0274 - 2901033-2901778,2902475-2902634                           27   5.0  
03_06_0351 - 33309140-33309156,33309791-33309851,33309931-333101...    27   5.0  

>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 258 PSSXARGSKLTPRXVVFSAHRGXRLQH*EXLPESAPKP 145
           PSS +   + +   + F  HR  R+ H + +PE  P P
Sbjct: 139 PSSTSSSPECSSVAICFPCHRRHRMFHRKPMPEYQPPP 176


>03_06_0351 -
           33309140-33309156,33309791-33309851,33309931-33310106,
           33310191-33310248,33310581-33310685,33310793-33310850,
           33310964-33311097
          Length = 202

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 403 TMLIFLLLVFALQPRCSRP 347
           T++IFLLL+ AL P  SRP
Sbjct: 6   TLVIFLLLLLALVPALSRP 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,853,365
Number of Sequences: 37544
Number of extensions: 159140
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)