Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0915
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30990.1 68415.m03780 expressed protein contains Pfam profile...    29   1.0  
At5g57090.1 68418.m07128 auxin transport protein (EIR1) identica...    28   3.1  
At5g05800.1 68418.m00638 expressed protein                             27   5.5  
At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein co...    27   7.2  
At3g61660.1 68416.m06910 hypothetical protein                          26   9.5  
At3g29720.1 68416.m03746 transferase-related low similarity to a...    26   9.5  
At3g29680.1 68416.m03741 transferase family protein similar to a...    26   9.5  
At2g01960.1 68415.m00131 expressed protein                             26   9.5  

>At2g30990.1 68415.m03780 expressed protein contains Pfam profile:
           PF05097 protein of unknown function (DUF688)
          Length = 573

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 20/120 (16%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
 Frame = +1

Query: 13  LKQVKKVFKTX*ASLQIYNKQNVVDXVVXXLRNLXSSSXHGSTFRLGG*LRKXFSVLQPX 192
           +++++  ++    S + +NKQN     +  + ++   S  G +  +   + +    L+  
Sbjct: 296 VRRMRSKYQDSAPSNETHNKQNEDKRKLKLIESVAKGSSQGESLSVSS-IPQGKEKLENV 354

Query: 193 PPVSR-EYYRPWXQLAAAGSRTWXPASKSDKXKFXVXLDVQHFAPEEISVKTADGYIVVE 369
              SR +  + + +L A+   TW P+S++   +  + +D+ H   +++  ++    I+ E
Sbjct: 355 GTASRSKISKNFGELLASDENTWEPSSETPVAEKTLYVDIVHLVDKKVQEESKKQPILKE 414


>At5g57090.1 68418.m07128 auxin transport protein (EIR1) identical
           to auxin transport protein EIR1 [Arabidopsis thaliana]
           gi|3377507|gb|AAC39513; identical to root gravitropism
           control protein [Arabidopsis thaliana]
           gi|4322486|gb|AAD16060
          Length = 647

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 256 KFXSPRQQVDXTXGSILCSQGGPVAALRXSSGVSPQAEMLIHEXTRT 116
           K  SPR     + G      GG V +L+ S GV+P+      E  +T
Sbjct: 273 KAPSPRHGYTNSYGGAGAGPGGDVYSLQSSKGVTPRTSNFDEEVMKT 319


>At5g05800.1 68418.m00638 expressed protein
          Length = 449

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 202 SREYYRPWXQLAAAGSRTWXPASKS 276
           +R+ ++ W QL  A S  W P S+S
Sbjct: 228 TRKAWKIWCQLVGASSMKWDPESRS 252


>At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein
           contains Pfam PF00728: Glycosyl hydrolase family 20,
           catalytic domain; contains Pfam PF02838: Glycosyl
           hydrolase family 20, domain 2; similar to
           Beta-hexosaminidase beta chain precursor (EC 3.2.1.52)
           (N-acetyl-beta- glucosaminidase)
           (Beta-N-acetylhexosaminidase) (Hexosaminidase B)
           (Swiss-Prot:P07686) [Homo sapiens]
          Length = 535

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 223 WXQLAAAGSRTWXPASKSDKXKFXVXLDVQHF 318
           W + AAA  R W P +K  K    V   + HF
Sbjct: 473 WPRAAAAAERLWTPYAKLAKNPNNVTTRLAHF 504


>At3g61660.1 68416.m06910 hypothetical protein 
          Length = 129

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 104 YGIXRPRRLMDQHF-GLGADSGRXSQCCNRXPL*AENTTXRGVN 232
           Y +     ++++HF  L + +G    CC+R P   E    RG N
Sbjct: 20  YELVSLTHIIERHFMSLPSLAGAGKVCCSRRPSDLEEKANRGAN 63


>At3g29720.1 68416.m03746 transferase-related low similarity to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234
          Length = 220

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 301 LDVQHFAPEEISVKTADGYIVVEGQTRGEERSAWLHI 411
           + +  F  +  S+ T   ++V++G+T  +   AW HI
Sbjct: 70  IQITFFPNQGFSIGTIVHHVVMDGKTASKFYKAWAHI 106


>At3g29680.1 68416.m03741 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 451

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 301 LDVQHFAPEEISVKTADGYIVVEGQTRGEERSAWLHI 411
           L +  F  +  S+ T   ++V++G+T  +   +W HI
Sbjct: 143 LQITLFPNQGFSIGTTVHHVVMDGKTASKFHKSWAHI 179


>At2g01960.1 68415.m00131 expressed protein
          Length = 260

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 171 FLSAATGPPCEQRILPXVXSTCC 239
           F+++   PP ++R+LP V + CC
Sbjct: 148 FVNSYALPPYDRRLLPSVKTGCC 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,635,781
Number of Sequences: 28952
Number of extensions: 114794
Number of successful extensions: 220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)