Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0907
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    30   0.070
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    24   3.5  

>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 29.9 bits (64), Expect = 0.070
 Identities = 23/80 (28%), Positives = 41/80 (51%)
 Frame = -3

Query: 271 FIYTKHTIALNTDGCHRRHPRRYVSEFNISSCSTCKW*CTESRGRSMGRSKNRRVLHTYS 92
           ++Y + T  L+T  CH  +P   +S  N SS  TC    + S   + G ++N    +T+ 
Sbjct: 344 YLYGQETELLSTPYCHTSYPA--MSRLNSSSGYTC---VSSSSVTNSGHTEN----NTWR 394

Query: 91  YRDRSKG*YLKVSKFSLQRF 32
             ++SKG ++ ++ FS   F
Sbjct: 395 SDEQSKG-FVDINSFSQSLF 413


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 86  RSKQRLIFKSIKVFTSAFL*NWYEWF 9
           R + +L+     +FTSAF+ NW + F
Sbjct: 91  RRESKLVSHVCSLFTSAFVFNWPKHF 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 890,246
Number of Sequences: 5004
Number of extensions: 10555
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)