Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0905
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 30 0.20
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 1.9
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 27 2.5
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 27 2.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.5
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 26 3.3
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 4.3
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.3
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 4.3
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 4.3
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 26 4.3
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom... 25 7.5
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 25 10.0
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 10.0
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 10.0
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 30.3 bits (65), Expect = 0.20
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 246 RDPEFNDDYHEAEESIEPTNHEISKNTRQATLEIYLQKIKKSNMEKNMRIEQEVRNS 416
R P+ YH+ SIE + I N Q+ Y+++ S+ E N + ++NS
Sbjct: 32 RAPKSKTTYHKPPSSIESVSTLIQPNKSQSVTSPYVKQFTFSSKEYNSHNKHALQNS 88
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 312 ISKNTRQATLEIYLQKIKKSNMEKNMRIEQEVRN-SLKAMKPCNKM*YFPSPCQAII 479
++KN + +L IYL +NM+ ++ ++ + +L + ++ Y P P +I
Sbjct: 1110 VAKNIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVI 1166
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 410 SNFLFYSHVFLHVAFLYFLQIYF*GCLTSIFR 315
S + + H+FL+VA YF+ + C T FR
Sbjct: 183 SALICFKHIFLYVAPAYFVYLLRVYCFTPNFR 214
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 117 P*CLPCSSVRIPSRPLSTRISCPICHTC 34
P C C S+ + ++ C +CHTC
Sbjct: 114 PKCFECDSIELDTKYFDI-FHCRVCHTC 140
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 2.5
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Frame = +3
Query: 273 HEAEESIEPTNHEISKNT-----RQATLEIYLQKI-----KKSNMEKNMRIEQEVRNSLK 422
H+ E+ IE N EIS ++ LE +Q+ K +++E IEQEV +SLK
Sbjct: 126 HQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQEVISSLK 185
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 406 LETPLKP*NHATKCNIFQVPAKPLFARLPQTXSNQI 513
LE +K + N+ Q+ A PLFA LPQ Q+
Sbjct: 320 LEALIKSYSKQLPSNLPQIQACPLFASLPQEQQLQV 355
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 467 AGTWKILHFVAWFHGFKGVSNFLFYSHVFLHVAFLYFL 354
A WK+ +G S+ LF+S+V LH+ + Y +
Sbjct: 586 ARNWKLNLTHQQLNGTNDTSDLLFHSNVSLHLFYHYLI 623
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 4.3
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = +2
Query: 53 QEILVLRGLDGILTELQGRHYGKHLV 130
Q+ L+LR + ++ ++Q +G+H++
Sbjct: 746 QKFLILRSISHVIPKIQNTRHGRHIL 771
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 267 DYHEAEESIEPTNHEISKNTRQATLEIYLQKIKKSNMEKNMRIEQ 401
DY A E + P + SKN +E+ LQK +K +N+ E+
Sbjct: 83 DYRSANEKLRPYSKYASKN-----IELKLQKKEKEEELRNLEEEK 122
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 88 SHRTTRKTLRQTFGKDFTPRKSLRALVMEKSAKRQTALVDAKE 216
S TT TLR+ F + L + ++++ ++ +L DAK+
Sbjct: 5 SFSTTLDTLRRRFNDSSSEEDKLEKNIQDETSIKEVSLQDAKQ 47
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 134 ISHLENLYER**WKSPLRDRLHLLMPK-KFLK 226
IS L NL+ WKSPL + LH P FLK
Sbjct: 286 ISWLLNLFVLGSWKSPLLNALHYPFPSVGFLK 317
>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 359 FLQIYF*GCLTSIFRYFM 306
+LQ+ F C+ SIF YF+
Sbjct: 122 YLQLMFNACVASIFLYFL 139
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 196 ALVDAKEISKMPQANSTEIPNLMMTTMKQRNQSNQQI 306
AL+D +P ++ E+P + + QR +Q I
Sbjct: 465 ALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSI 501
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 246 RDPEFNDDYHEAEESIEP 299
++PEFN+D+ + E +EP
Sbjct: 562 KNPEFNEDHVKKAEHLEP 579
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 249 DPEFNDDYHEAEESIEPTNHEISKNTRQATLEIYLQKIKKSNMEKNMRIE 398
D D+Y E E+S+ TN + K +Q T+ + + + KN+ ++
Sbjct: 251 DETLCDEYLENEDSLAFTNDRLFKIIKQKTISGNVVPVLCGSSLKNIAVQ 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,930
Number of Sequences: 5004
Number of extensions: 44378
Number of successful extensions: 145
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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