Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0905
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0110 + 22840636-22840720,22840958-22841310                       29   3.3  
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335...    28   5.8  
05_01_0115 + 804674-804766,805729-806442                               27   7.7  

>04_04_0110 + 22840636-22840720,22840958-22841310
          Length = 145

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 123 CLP*CLPCSSVRIPSRPLSTRISCPICHTCTFYGR 19
           C P C PC  V +  R      SCP+ + C   GR
Sbjct: 105 CGP-CSPCRRVMVSLRCAEAAESCPVAYRCMCRGR 138


>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
            16033714-16033866,16034277-16034702,16035922-16037668,
            16037687-16038183,16038519-16038709,16038786-16038941,
            16040077-16040311,16040416-16040723,16041279-16041439,
            16041852-16041895,16041975-16042067
          Length = 1751

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 249  DPEFNDDYHEAEESIEPTNHEISKNTRQATLEIYLQKIKKSN 374
            DP+F + Y + EES +    + S  T + T    LQK +K+N
Sbjct: 1268 DPDFKNSYLKKEESTD----DASSKTEETTNNASLQKEEKAN 1305


>05_01_0115 + 804674-804766,805729-806442
          Length = 268

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 124 FGKDFTPRKSLRALVMEKSAKRQTALVDA-KEISKMPQANSTEIPNLMMTTMKQRNQSNQ 300
           F  D  P++S+  L  ++S    T  +DA KE  K  + +  ++ +L+    K+R+ +  
Sbjct: 23  FQDDLQPQESMEEL--KQSLMATTLELDAAKEELKKKEQSIAKLADLVRHVAKERDDARD 80

Query: 301 QIMKYLKILVKQP 339
           Q+ + L     +P
Sbjct: 81  QLQRLLAAAAAKP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,860,807
Number of Sequences: 37544
Number of extensions: 264345
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)