Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0905
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 315 SKNTRQATLEIYLQKIKKSNMEKNMRIEQEVR 410
           S+N       + +Q +KK ++E+ ++I +E+R
Sbjct: 133 SENMTVTFANLGIQCVKKKDIEEALKIREEIR 164


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 315 SKNTRQATLEIYLQKIKKSNMEKNMRIEQEVR 410
           S+N       + +Q +KK ++E+ ++I +E+R
Sbjct: 133 SENMTVTFANLGIQCVKKKDIEEALKIREEIR 164


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 243 YRDPEFNDDYHEAEESIEP 299
           ++DP+    +H AEE+  P
Sbjct: 518 FKDPKVESAFHNAEEAFSP 536


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 467 AGTWKILHFVAWFHGFKG 414
           +GTW I++  A+ + +KG
Sbjct: 198 SGTWDIINVPAYLNTYKG 215


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = -2

Query: 332 LTSIFRYFMICWFD*FLCFMVVIIKFGISVEFACGILEISLAS 204
           L  +   F+ICW   F C ++  I   ++ +   G+    + S
Sbjct: 621 LAIVLGVFLICWLPFFTCNIMDAICTKLTADCQPGVTAFIVTS 663


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 260 KFGISVEFACGILE 219
           K+GI++  ACGI++
Sbjct: 47  KYGIAMSSACGIVQ 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,212
Number of Sequences: 438
Number of extensions: 2890
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)