Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0905
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08390.1 68418.m00988 transducin family protein / WD-40 repea...    31   0.52 
At1g49950.3 68414.m05604 DNA-binding protein, putative contains ...    31   0.69 
At1g49950.2 68414.m05603 DNA-binding protein, putative contains ...    31   0.69 
At1g49950.1 68414.m05602 DNA-binding protein, putative contains ...    31   0.69 
At3g19100.1 68416.m02427 calcium-dependent protein kinase, putat...    30   1.2  
At3g61940.1 68416.m06956 zinc transporter, putative similar to z...    29   1.6  
At1g16860.1 68414.m02035 merozoite surface protein-related conta...    29   1.6  
At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) / ...    29   2.8  
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    28   3.7  
At5g59760.1 68418.m07490 hypothetical protein                          27   6.4  
At3g01015.1 68416.m00001 expressed protein ; expression supporte...    27   6.4  
At4g12590.1 68417.m01985 expressed protein contains Pfam PF05863...    27   8.5  
At3g11110.1 68416.m01345 zinc finger (C3HC4-type RING finger) fa...    27   8.5  
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ...    27   8.5  
At1g55120.1 68414.m06295 beta-fructosidase, putative / beta-fruc...    27   8.5  

>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
           family protein similar to katanin p80 subunit
           [Strongylocentrotus purpuratus] GI:3005601; contains
           Pfam profile PF00400: WD domain, G-beta repeat
          Length = 871

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 22  PVESTSMTDGTRNSSAEGSGWD-SHRTTRKTLRQTFGK 132
           P+E  ++ DG    S EG  WD + RT +++  + FG+
Sbjct: 626 PIEPITLQDGNTYPSDEGGSWDTAERTNKESKCRVFGR 663


>At1g49950.3 68414.m05604 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 300

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 18/82 (21%), Positives = 36/82 (43%)
 Frame = +1

Query: 31  STSMTDGTRNSSAEGSGWDSHRTTRKTLRQTFGKDFTPRKSLRALVMEKSAKRQTALVDA 210
           +  + D  RN S   +GW S   +R  +++TF     P++   +L +  S +     VDA
Sbjct: 46  NVDLKDKWRNMSVMANGWGSREKSRLAVKRTFS---LPKQEENSLALTNSLQSDEENVDA 102

Query: 211 KEISKMPQANSTEIPNLMMTTM 276
               ++        PN+ + ++
Sbjct: 103 TSGLQVSSNPPPRRPNVRLDSL 124


>At1g49950.2 68414.m05603 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 300

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 18/82 (21%), Positives = 36/82 (43%)
 Frame = +1

Query: 31  STSMTDGTRNSSAEGSGWDSHRTTRKTLRQTFGKDFTPRKSLRALVMEKSAKRQTALVDA 210
           +  + D  RN S   +GW S   +R  +++TF     P++   +L +  S +     VDA
Sbjct: 46  NVDLKDKWRNMSVMANGWGSREKSRLAVKRTFS---LPKQEENSLALTNSLQSDEENVDA 102

Query: 211 KEISKMPQANSTEIPNLMMTTM 276
               ++        PN+ + ++
Sbjct: 103 TSGLQVSSNPPPRRPNVRLDSL 124


>At1g49950.1 68414.m05602 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 300

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 18/82 (21%), Positives = 36/82 (43%)
 Frame = +1

Query: 31  STSMTDGTRNSSAEGSGWDSHRTTRKTLRQTFGKDFTPRKSLRALVMEKSAKRQTALVDA 210
           +  + D  RN S   +GW S   +R  +++TF     P++   +L +  S +     VDA
Sbjct: 46  NVDLKDKWRNMSVMANGWGSREKSRLAVKRTFS---LPKQEENSLALTNSLQSDEENVDA 102

Query: 211 KEISKMPQANSTEIPNLMMTTM 276
               ++        PN+ + ++
Sbjct: 103 TSGLQVSSNPPPRRPNVRLDSL 124


>At3g19100.1 68416.m02427 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK3 [Nicotiana tabacum]
           gi|16904226|gb|AAL30820; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 599

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +1

Query: 1   IRPSLLPPVESTSMTDGTRNSSAEGSGWDSHRTTRKTLRQTFGKDF---TPRKSLRALVM 171
           ++ S   P  + S     RN S +G G +S   T   LRQ   + F   +P + +R ++ 
Sbjct: 45  VKASPFFPFYTPSPARHRRNKSRDGGGGESKSVTSTPLRQ-LARAFHPPSPARHIRDVLR 103

Query: 172 EKSAKRQTALVDAKE 216
            +  K++ AL  A++
Sbjct: 104 RRKEKKEAALPAARQ 118


>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; similar to zinc transporter
           ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
           of the cation diffusion facilitator (CDF) family, or
           cation efflux (CE) family, PMID:11500563
          Length = 334

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 284 LCFMVVIIKFGISVEFACGILEISLA-STSAVCLLAD 177
           LCF+VV+    +S+E  CGI   SLA    A  LL D
Sbjct: 33  LCFVVVLCLLFMSIEVVCGIKANSLAILADAAHLLTD 69


>At1g16860.1 68414.m02035 merozoite surface protein-related contains
           weak similarity to merozoite surface protein [Plasmodium
           falciparum] gi|12043655|gb|AAG47601
          Length = 474

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 24/93 (25%), Positives = 42/93 (45%)
 Frame = +1

Query: 58  NSSAEGSGWDSHRTTRKTLRQTFGKDFTPRKSLRALVMEKSAKRQTALVDAKEISKMPQA 237
           NSS     W   R++ + +   +  DF  +  LRALV   S  + T LVD   +    Q 
Sbjct: 326 NSSHRHFTWGL-RSSERHVVDFYISDF--QSGLRALVKTGSGAKVTPLVDDSVVIDFKQG 382

Query: 238 NSTEIPNLMMTTMKQRNQSNQQIMKYLKILVKQ 336
           +    P+ +    K+   S+ +IM+  +  +K+
Sbjct: 383 SEQVSPDFVRWLGKKNLTSDDRIMRLKEGYIKE 415


>At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) /
           caspase family protein contains similarity to
           latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
           contains Pfam profile PF00656: ICE-like protease
           (caspase) p20 domain
          Length = 418

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 102 CSSVRIPSR--PLSTRISCPICHTCT 31
           CSS R P    P +TRI C ICH  T
Sbjct: 7   CSSCRTPLHLPPGATRIRCAICHAFT 32


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = -2

Query: 329 TSIFRYFMICWFD*FLCFMVVIIKFGISVEFACGI---LEISLASTSAVCLLADFSITNA 159
           T I+  + + W   FL FM+ + K  + ++  C +   L+  L S        + S+   
Sbjct: 119 TLIYYEYPLIWSSVFLDFMLHLCKGAVVIDMFCRVLNALDDELISLDYPRTPEEISVAAR 178

Query: 158 RKDFRGVKSLPNVCRSVFLVVL*ESHPDP 72
            KD    + +P + R+ + +V    + DP
Sbjct: 179 VKDAMRQQCVPQIARAWYDIVSMYKNSDP 207


>At5g59760.1 68418.m07490 hypothetical protein
          Length = 221

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/43 (23%), Positives = 27/43 (62%)
 Frame = +1

Query: 190 QTALVDAKEISKMPQANSTEIPNLMMTTMKQRNQSNQQIMKYL 318
           +T  ++A E S+  +    ++ NL+  T ++R+++ QQ+ +++
Sbjct: 19  ETLKMEANEKSRTHREEVNQLLNLLKFTQQERDEARQQLSQFI 61


>At3g01015.1 68416.m00001 expressed protein ; expression supported
           by MPSS
          Length = 488

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 49  GTRNSSAEGSGWDSHRTTRKTLRQTFGKDFTPRKSLRALVMEKS-AKRQTALVDAKEISK 225
           G RNS    +   S R+T+K ++ T  K F  R   R  + E+  AK+   +   K   +
Sbjct: 284 GRRNSFESSASMGSRRSTKKQIKVTSLKPFKLRTEERGRMKEEEFAKKLHEMTLEKAKKR 343

Query: 226 MPQA 237
           +P A
Sbjct: 344 IPIA 347


>At4g12590.1 68417.m01985 expressed protein contains Pfam PF05863:
           Eukaryotic protein of unknown function (DUF850)
          Length = 246

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 127 GKDFTPRKSLRALVMEKSAKRQTALVDAKEISKMPQANSTEIPNLMMTTMKQ 282
           G +F P KS RA     S +    L   K  ++ PQA     PN+ M  MK+
Sbjct: 63  GANFIPPKSFRARRFYFSNEENGLLHVPKGEAQNPQAAMFSDPNMAMDMMKK 114


>At3g11110.1 68416.m01345 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 158

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 126 KCLP*CLPCSSVRIPSRPLSTRISCPIC 43
           K LP C  C       R L T  SCP+C
Sbjct: 121 KVLPPCSHCYHCECVDRWLKTESSCPLC 148


>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 587

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 103 RKTLRQTFGKDFTPRKSL 156
           R++L+QT+G DFT  +SL
Sbjct: 218 RESLKQTYGADFTDNRSL 235


>At1g55120.1 68414.m06295 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase GI:402740
          Length = 594

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 68  LRGLDGILTELQGRHYGKHLVKISHLENLYE 160
           + G DG+ T   G +  KH++K+S +E L++
Sbjct: 244 ITGSDGVETSSVGENGIKHVLKVSLIETLHD 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,489,498
Number of Sequences: 28952
Number of extensions: 227266
Number of successful extensions: 725
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)