Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0898
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   6.3  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   8.4  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   8.4  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -3

Query: 350 FSPS*LSSELIQYGQDRPKTFRLLYVKSCLRQETLIELLNFALIYSIWRACEQDNSIG 177
           FS S LSS +I+     PKT     +  CL+  T +E L+   +++    C Q N +G
Sbjct: 660 FSESSLSSPIIE----EPKT-----LIDCLKNFTHVEELSGENMFACENCCNQPNEVG 708


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 468 FDNFYQLFKAY*NTFYFNIYIQRAL 542
           FDN + LFK   NT Y  +Y++ +L
Sbjct: 55  FDNLFNLFKVI-NTTYTFLYLRNSL 78


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 484 NYLKLIKILFISIYISKEPYRRIWTNSYYMX*IPNPV 594
           NY+K+ K    +I  + E    IW N Y++  +P  V
Sbjct: 305 NYVKVNKAFADTIVDNYEQDDMIWINDYHLLLVPEMV 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,544
Number of Sequences: 5004
Number of extensions: 38694
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)