Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0897
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408...    29   3.7  
04_04_1376 + 33058306-33059763,33059851-33059991,33060594-330606...    29   3.7  
12_01_0109 + 853043-853426,853653-853787,853866-854138                 28   4.9  
09_06_0262 - 21921647-21922796,21922897-21923423                       28   4.9  
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    28   6.5  
06_01_0611 + 4420873-4422207                                           28   6.5  
04_04_0699 - 27345243-27346199                                         28   6.5  

>07_03_1756 -
           29239137-29239325,29239741-29240259,29240693-29240800,
           29240856-29241155,29241730-29241831,29243042-29243209,
           29243878-29243991,29244184-29244288,29244372-29244502,
           29244794-29244918,29245001-29245172,29245277-29245316,
           29245636-29245722,29245803-29245868,29246412-29246510,
           29246714-29246836,29247066-29247107,29247195-29247260,
           29247362-29247553,29247672-29247737,29248839-29249141
          Length = 1038

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 350 ALIVNGTYEPNDDECLNPWRDDTEEEELAXAVQNAAITEGE 472
           A IV  + EPN  +  N  +D+T E+    A +NAA+T  +
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMED---PATENAAMTNAD 722


>04_04_1376 +
           33058306-33059763,33059851-33059991,33060594-33060644,
           33061094-33061171,33061245-33061388,33061871-33062002
          Length = 667

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 320 FHI-CIRVHVLHCKTCPQCRQTPLKS 246
           FH+ C+R  ++   TCP C+ T LKS
Sbjct: 642 FHVGCVRQWLVVKNTCPICKNTALKS 667


>12_01_0109 + 853043-853426,853653-853787,853866-854138
          Length = 263

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 207 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 76
           G+P L   GD+ + L+F  G+ H  T VAL   F       Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171


>09_06_0262 - 21921647-21922796,21922897-21923423
          Length = 558

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 392 CLNPWRDDTEEEELAXAVQNAAITEGEEKKDDKAIEPPM 508
           CL+PW D    E     V +AA   GE   D +  E  M
Sbjct: 300 CLSPWSDHRSSEYYNCNVYDAAKANGEASDDKRRREQGM 338


>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 320 FHI-CIRVHVLHCKTCPQCR 264
           FH+ CI + ++H  TCP CR
Sbjct: 536 FHVACIDIWLMHHSTCPVCR 555


>06_01_0611 + 4420873-4422207
          Length = 444

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 320 FHI-CIRVHVLHCKTCPQCRQTPLKSSQGAD 231
           FH+ CI   +L   TCP CR + L ++  AD
Sbjct: 146 FHVPCIDAWLLSHSTCPICRGSVLAAAAAAD 176


>04_04_0699 - 27345243-27346199
          Length = 318

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 318 SYLHSSACTSL*NLPSMSTNSSEEFSRRGFADEHSGVGMPSLLHEGDL*WPLSFHY 151
           S+  SS+CT+     S S++ S +  +RG A   S + MP +     L WP+   Y
Sbjct: 244 SFSSSSSCTTTTTSSSTSSSGSPKRRKRGEAAAAS-MSMPLVPPPSQLNWPVQAWY 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,749
Number of Sequences: 37544
Number of extensions: 261824
Number of successful extensions: 727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)