Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0897
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    31   0.82 
U20864-10|AAK68355.1|  596|Caenorhabditis elegans C. elegans ADA...    25   6.5  
U20864-11|AAV58867.1|  583|Caenorhabditis elegans C. elegans ADA...    25   6.5  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = +2

Query: 239 LENSSEEFVDIEGKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
           L+N   + + IE  FY  VH                R  IV G  EP  ++   P  +  
Sbjct: 33  LKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPILEGL 92

Query: 419 EEEELA 436
           E ++LA
Sbjct: 93  EGDQLA 98


>U20864-10|AAK68355.1|  596|Caenorhabditis elegans C. elegans ADA-2
           protein, isoform a protein.
          Length = 596

 Score = 24.6 bits (51), Expect(2) = 6.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 158 NDSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVD 268
           ND+    S SCR  G P+P+       +  SS +  D
Sbjct: 257 NDNSPGPSSSCRKKGPPSPKRRKTTRVMRESSSDSDD 293



 Score = 21.4 bits (43), Expect(2) = 6.5
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +2

Query: 374 EPNDDECLNPWRDDTEEEELAXAVQNAAITEGEEKKDDK 490
           + +D +  +    +TEEE+   A + A   + E+++++K
Sbjct: 297 QASDKDTYHGMERETEEEDPPSAFETAQEFDTEDEEEEK 335


>U20864-11|AAV58867.1|  583|Caenorhabditis elegans C. elegans ADA-2
           protein, isoform b protein.
          Length = 583

 Score = 24.6 bits (51), Expect(2) = 6.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 158 NDSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVD 268
           ND+    S SCR  G P+P+       +  SS +  D
Sbjct: 244 NDNSPGPSSSCRKKGPPSPKRRKTTRVMRESSSDSDD 280



 Score = 21.4 bits (43), Expect(2) = 6.5
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +2

Query: 374 EPNDDECLNPWRDDTEEEELAXAVQNAAITEGEEKKDDK 490
           + +D +  +    +TEEE+   A + A   + E+++++K
Sbjct: 284 QASDKDTYHGMERETEEEDPPSAFETAQEFDTEDEEEEK 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,155,118
Number of Sequences: 27780
Number of extensions: 226352
Number of successful extensions: 695
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)