Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0897
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 308 IRVHVLHCKTCPQCRQTPLKSSQGADSPTNIRG*GCH 198
           ++ HVL   T P+ + TP   ++      NIR   CH
Sbjct: 391 VQTHVLTIHTIPEVKVTPRFQAKRLKEEANIR---CH 424


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 389 ECLNPWRDDTEEEELA 436
           + L  W DD++EEEL+
Sbjct: 34  QMLGIWADDSDEEELS 49


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 329 CKVFHICIRVHVLHCKTC 276
           C V   C+ +   +CKTC
Sbjct: 284 CWVPFFCVNIVTSYCKTC 301


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 531 RLLVQHIQDVSMLSEMMQEH 590
           +LL QHI   + L   MQ+H
Sbjct: 76  QLLQQHILSPTQLQSFMQQH 95


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 421 FSVITPWVETFIIIRFICAIHN 356
           +  ITP ++  + I   C +HN
Sbjct: 312 YKYITPLIQKHLKIHDTCGVHN 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,981
Number of Sequences: 438
Number of extensions: 2450
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)