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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0897
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger) fa...    30   1.0  
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa...    28   4.1  
At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) fa...    28   4.1  
At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger) fa...    28   5.4  
At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger) fa...    27   7.2  
At2g26530.1 68415.m03183 expressed protein                             27   7.2  
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    27   9.5  

>At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 378

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 329 CKVFHI-CIRVHVLHCKTCPQCRQTPLKSSQGAD 231
           C VFH  C+ V +    TCP CR   + + QG D
Sbjct: 155 CHVFHADCVDVWLSEHSTCPLCRADLVLNQQGDD 188


>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 236

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 329 CK-VFHI-CIRVHVLHCKTCPQCR 264
           CK +FH+ C+   +  C TCP CR
Sbjct: 127 CKHIFHVDCVDTWLTTCSTCPVCR 150


>At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 302

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 335 EACKVFHI-CIRVHVLHCKTCPQCR 264
           E C VFH  C+ V +    TCP CR
Sbjct: 114 ECCHVFHADCVSVWLSDHSTCPLCR 138


>At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger)
           family protein (ATL4) contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 334

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 329 CKVFHI-CIRVHVLHCKTCPQCRQTPLKSSQ 240
           C  FH  CI + ++  +TCP CR +PL +S+
Sbjct: 137 CHAFHADCIDIWLVSNQTCPLCR-SPLFASE 166


>At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 267

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 344 FHKEACKVFHICIRVHVLHCKTCPQCRQTPLKSS 243
           FH + C +  +  R +  HCK C  C    L+++
Sbjct: 108 FHCDDCGICRVGGRENFFHCKKCGSCYAVGLRNN 141


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 300 HSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 431
           H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to WDR protein, form B (GI:14970593) [Mus
           musculus]
          Length = 1589

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 158 NDSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVDIEGKFYSEVH 298
           NDS ++   S  SDG     CS+++  LE SSE+  D+E    S  H
Sbjct: 841 NDSEYNAEVS--SDGARASPCSNSSNELECSSED-SDVENIHESSYH 884


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,349,603
Number of Sequences: 28952
Number of extensions: 207480
Number of successful extensions: 653
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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