Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0894
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    48   4e-07
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    48   4e-07
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   0.53 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   0.93 
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    25   3.7  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   4.9  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    24   6.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   6.5  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 48.4 bits (110), Expect = 4e-07
 Identities = 23/55 (41%), Positives = 34/55 (61%)
 Frame = +2

Query: 104 VRDKLNNQVLFDKPXYEKLYKXVPQYKLITPAVXSERXKXRGSLARRALIDXGER 268
           V+DK  +  +FDK   +++ K VP +K I+ +V  +R K  GSLAR A+ D  ER
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 48.4 bits (110), Expect = 4e-07
 Identities = 23/55 (41%), Positives = 34/55 (61%)
 Frame = +2

Query: 104 VRDKLNNQVLFDKPXYEKLYKXVPQYKLITPAVXSERXKXRGSLARRALIDXGER 268
           V+DK  +  +FDK   +++ K VP +K I+ +V  +R K  GSLAR A+ D  ER
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 0.53
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 159  SFSYXGLSNNTWLFNLSRTFPXDHFFFXALPPP 61
            SF Y  L NN++L  +S +   ++ F+   PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 0.93
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 33  KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 131
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 123 LFNLSRTFPXDHFFFXALPPPDP 55
           LF   R  P DH+F    PP +P
Sbjct: 113 LFKYLRCEPEDHYFLLTEPPLNP 135


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 12  RLRPNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRN 158
           R  PNS+K+ +R  K P++     +S P+   +T   +R   +   +RN
Sbjct: 150 RTTPNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRN 195


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 136 KQHLVVQLVTNFSXGPLLLLGFAAT 62
           ++++VVQ +  F   PL+LL FA++
Sbjct: 48  EENMVVQFLKQFVKDPLILLLFASS 72


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 180  YXGTXLYSFSYXGLSNNTWLFNLSRTFPXD 91
            Y G+     SY  L N TW ++L  T+P +
Sbjct: 984  YDGSMPSKMSY-NLENRTWSYDLISTWPAE 1012


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,154,319
Number of Sequences: 5004
Number of extensions: 16683
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)