Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0894
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015...    66   1e-11
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662...    64   2e-11
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249...    52   2e-07
10_01_0146 - 1719997-1720386,1721498-1721515                           29   0.86 
04_04_1699 + 35462160-35462555,35463114-35463196,35463317-354633...    27   6.1  

>09_06_0339 -
           22400534-22400647,22401264-22401398,22401491-22401565,
           22401646-22401648
          Length = 108

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 30/54 (55%), Positives = 40/54 (74%)
 Frame = +2

Query: 107 RDKLNNQVLFDKPXYEKLYKXVPQYKLITPAVXSERXKXRGSLARRALIDXGER 268
           ++K+NN VLFD+  Y+KL   VP+YK ITP+V SER +  GSLARRA+ D  +R
Sbjct: 34  KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDR 87


>08_02_1576 +
           27965862-27965864,27965952-27966026,27966113-27966247,
           27967080-27967193
          Length = 108

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 29/50 (58%), Positives = 38/50 (76%)
 Frame = +2

Query: 107 RDKLNNQVLFDKPXYEKLYKXVPQYKLITPAVXSERXKXRGSLARRALID 256
           ++K+NN VLFD+  Y+KL   VP+YK ITP+V SER +  GSLARRA+ D
Sbjct: 34  KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAIND 83


>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
            2496476-2496577,2496853-2497003,2497173-2497222,
            2497432-2497557,2497761-2497863,2498104-2498204,
            2498540-2498677,2498768-2498911,2499028-2499103,
            2499224-2499309,2499432-2499560,2500572-2500674,
            2500776-2500843,2500912-2501013,2501432-2501527,
            2501723-2501848,2502152-2502254,2502427-2502569,
            2503017-2503154,2503248-2503391,2503535-2503610,
            2503883-2503968,2504135-2504212,2505180-2505254,
            2505362-2505496,2506240-2506272,2507886-2507905,
            2508570-2508666,2508899-2509000,2510612-2510725
          Length = 1126

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +2

Query: 107  RDKLNNQVLFDKPXYEKLYKXVPQYKLITPAVXSERXK 220
            ++K+NN VLFDK  Y+KL   VP+YK ITP+V SER +
Sbjct: 968  KEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005


>10_01_0146 - 1719997-1720386,1721498-1721515
          Length = 135

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 3   RTRRLRPNSLKKHRRRRKDPVAAKPRRRS 89
           R   ++P+   + RRRR +P   +PRRR+
Sbjct: 77  RAAEMQPDDGGQRRRRRSEPATTQPRRRA 105


>04_04_1699 +
           35462160-35462555,35463114-35463196,35463317-35463378,
           35463745-35463806,35463932-35463991,35464079-35464111,
           35464196-35464261,35464349-35464393
          Length = 268

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 9   RRLRPNSLKKHRRRRKDPVAAKPRRRSGP 95
           R+  P    KHRR R D  A  PR+R  P
Sbjct: 31  RQRPPPGPTKHRRLRHDADAQPPRKRGHP 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,914,237
Number of Sequences: 37544
Number of extensions: 122910
Number of successful extensions: 357
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)