Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0894
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    68   2e-12
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   0.79 
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   5.5  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   5.5  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    27   5.5  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   7.3  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 33/49 (67%), Positives = 37/49 (75%)
 Frame = +2

Query: 104 VRDKLNNQVLFDKPXYEKLYKXVPQYKLITPAVXSERXKXRGSLARRAL 250
           VRDKLNN VLFD+  Y+KLYK V  YKLITP+V SER K R SLA+  L
Sbjct: 36  VRDKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGL 84



 Score = 33.1 bits (72), Expect = 0.064
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 264 KGLIKQXVQHHXQVIYTRXXKGDD 335
           KGL+K  V HH QV+YTR  K  D
Sbjct: 90  KGLVKCVVHHHGQVVYTRATKEAD 113


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 3   RTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 104
           R RR    S  +  RRR+ P AA PRRR  P+ +
Sbjct: 465 RRRRSPSGSKSRSPRRRRSPAAA-PRRRQSPQRR 497


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 42  RRRRKDPVAAKPRRRSGP 95
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 42  RRRRKDPVAAKPRRRSGP 95
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 110 DKLNNQVLFDKPXYEKLYKXVPQYK 184
           ++L NQVLFDKP  EK +    ++K
Sbjct: 32  EELANQVLFDKPRGEKRWLGKERHK 56


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 44  SVFFEAVWPKPSR 6
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 173  GLPCTVSHMXVYQTTPGCS 117
            G PCTV  M V   T GCS
Sbjct: 1690 GQPCTVECMEVVNVTLGCS 1708


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,580,940
Number of Sequences: 27780
Number of extensions: 100738
Number of successful extensions: 248
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)