Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0894
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34555.1 68417.m04910 40S ribosomal protein S25, putative           61   3e-10
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            61   3e-10
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo...    60   3e-10
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)            60   5e-10
At1g24706.1 68414.m03104 expressed protein                             28   1.7  

>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
          Length = 108

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 25/48 (52%), Positives = 37/48 (77%)
 Frame = +2

Query: 107 RDKLNNQVLFDKPXYEKLYKXVPQYKLITPAVXSERXKXRGSLARRAL 250
           ++K+NN VLFD+  Y+KL    P++KLITP++ S+R +  GSLARRA+
Sbjct: 34  KEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAI 81


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 25/50 (50%), Positives = 38/50 (76%)
 Frame = +2

Query: 107 RDKLNNQVLFDKPXYEKLYKXVPQYKLITPAVXSERXKXRGSLARRALID 256
           ++K+NN VLFD+  Y+KL    P++KLITP++ S+R +  GSLAR+A+ D
Sbjct: 50  KEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRD 99


>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
           ribosomal protein S25, Lycopersicon esculentum,
           PIR2:S40089
          Length = 108

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 25/48 (52%), Positives = 37/48 (77%)
 Frame = +2

Query: 107 RDKLNNQVLFDKPXYEKLYKXVPQYKLITPAVXSERXKXRGSLARRAL 250
           ++K+NN VLFD+  Y+KL    P++KLITP++ S+R +  GSLARRA+
Sbjct: 34  KEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAI 81


>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
          Length = 108

 Score = 60.1 bits (139), Expect = 5e-10
 Identities = 25/48 (52%), Positives = 37/48 (77%)
 Frame = +2

Query: 107 RDKLNNQVLFDKPXYEKLYKXVPQYKLITPAVXSERXKXRGSLARRAL 250
           ++K+NN VLFD+  Y+KL    P++KLITP++ S+R +  GSLARRA+
Sbjct: 34  KEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAI 81


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 117  NLSRTFPXDHFFFXALPPPDP 55
            +L ++ P DHF    LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,196,686
Number of Sequences: 28952
Number of extensions: 91850
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)