Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0893
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   122   2e-29
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   122   2e-29
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   1.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   1.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    24   9.3  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    24   9.3  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    24   9.3  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  122 bits (295), Expect = 2e-29
 Identities = 55/75 (73%), Positives = 60/75 (80%)
 Frame = +3

Query: 30  RPARCYRYCKXXPYPKSRFCRGVPDPKXRIFDLGXXRATVDDFPLXVHLVSDEYEQLXSX 209
           RPARCYRYCK  PYPKSR+ R VPD K RIFDLG  RA VD+FPL +HLVS+EYEQ+ S 
Sbjct: 4   RPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSE 63

Query: 210 ALXAGRICCNKYLVK 254
           AL A RIC NKYLVK
Sbjct: 64  ALEAARICANKYLVK 78



 Score =  106 bits (255), Expect = 1e-24
 Identities = 47/62 (75%), Positives = 53/62 (85%)
 Frame = +2

Query: 260 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMRGAFGKPQGTVARVRIGQXILSVRS 439
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQT MR AFGKP G VARV IGQ ++SVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140

Query: 440 SD 445
            D
Sbjct: 141 KD 142


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  122 bits (295), Expect = 2e-29
 Identities = 55/75 (73%), Positives = 60/75 (80%)
 Frame = +3

Query: 30  RPARCYRYCKXXPYPKSRFCRGVPDPKXRIFDLGXXRATVDDFPLXVHLVSDEYEQLXSX 209
           RPARCYRYCK  PYPKSR+ R VPD K RIFDLG  RA VD+FPL +HLVS+EYEQ+ S 
Sbjct: 4   RPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSE 63

Query: 210 ALXAGRICCNKYLVK 254
           AL A RIC NKYLVK
Sbjct: 64  ALEAARICANKYLVK 78



 Score =  106 bits (255), Expect = 1e-24
 Identities = 47/62 (75%), Positives = 53/62 (85%)
 Frame = +2

Query: 260 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMRGAFGKPQGTVARVRIGQXILSVRS 439
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQT MR AFGKP G VARV IGQ ++SVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140

Query: 440 SD 445
            D
Sbjct: 141 KD 142


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 228 ICCNKYLVKTAERISSIYA*DFTL 299
           ICC KY V T  R + I    FTL
Sbjct: 9   ICCAKYFVNTKSRFNEILPPRFTL 32


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 263 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMR 367
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 394  STLRLAKRTTHPSLEPISSS 335
            +T +LAKR T PSL P  S+
Sbjct: 957  TTTKLAKRITQPSLSPARST 976


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 277 YTHETSPFPRYP 312
           YTH TSP  RYP
Sbjct: 762 YTHFTSPIRRYP 773


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 354 RLGCVVRLASLRVL*HVFALDSXSCPCALV 443
           R+GC +  + L ++ +V  L    CP AL+
Sbjct: 252 RIGCEIEASVLFIMGNVLFLCEMECPGALI 281


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 88  VGVYLIPXSVSSIWV 132
           +GVYLIP + S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,144
Number of Sequences: 5004
Number of extensions: 29417
Number of successful extensions: 65
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)