Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0893
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 112 1e-25
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 111 2e-25
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 109 8e-25
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 28 3.0
06_01_0746 + 5580755-5582119 28 3.9
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415... 27 5.2
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 27 6.9
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 112 bits (269), Expect = 1e-25
Identities = 50/65 (76%), Positives = 57/65 (87%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMRGAFGKPQGTVARVRIGQXILS 430
K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQT MRGAFGKPQGT ARV IGQ +LS
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 431 VRSSD 445
VR +
Sbjct: 138 VRCKE 142
Score = 109 bits (263), Expect = 8e-25
Identities = 49/77 (63%), Positives = 56/77 (72%)
Frame = +3
Query: 30 RPARCYRYCKXXPYPKSRFCRGVPDPKXRIFDLGXXRATVDDFPLXVHLVSDEYEQLXSX 209
RPARCYR K PYPKSR+CRGVPDPK RI+D+G + VD+FP VHLVS E E + S
Sbjct: 4 RPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSE 63
Query: 210 ALXAGRICCNKYLVKTA 260
AL A RI CNKY+ K A
Sbjct: 64 ALEAARIACNKYMTKNA 80
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 111 bits (267), Expect = 2e-25
Identities = 50/62 (80%), Positives = 55/62 (88%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMRGAFGKPQGTVARVRIGQXILS 430
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQT MRGAFGKPQGT ARV IGQ +LS
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 431 VR 436
VR
Sbjct: 134 VR 135
Score = 97.9 bits (233), Expect = 3e-21
Identities = 44/73 (60%), Positives = 52/73 (71%)
Frame = +3
Query: 42 CYRYCKXXPYPKSRFCRGVPDPKXRIFDLGXXRATVDDFPLXVHLVSDEYEQLXSXALXA 221
CYR K PYPKSR+CRGVPDPK RI+D+G + VD+F VHLVS E E + S AL A
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 222 GRICCNKYLVKTA 260
RI CNKY+ K+A
Sbjct: 64 ARIACNKYMTKSA 76
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 109 bits (263), Expect = 8e-25
Identities = 49/76 (64%), Positives = 55/76 (72%)
Frame = +3
Query: 33 PARCYRYCKXXPYPKSRFCRGVPDPKXRIFDLGXXRATVDDFPLXVHLVSDEYEQLXSXA 212
P RCYR K PYPKSR+CRGVPDPK RIFD+G + + DDFPL VHLVS E E + S A
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 213 LXAGRICCNKYLVKTA 260
L A RI CNKY+ K A
Sbjct: 372 LEAARIACNKYMAKHA 387
Score = 107 bits (258), Expect = 3e-24
Identities = 49/65 (75%), Positives = 54/65 (83%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMRGAFGKPQGTVARVRIGQXILS 430
K GKD FH+R+ HP+HV+RINKMLSCAGADRLQT MRGAFGKP GT ARVRIGQ +LS
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 431 VRSSD 445
VR D
Sbjct: 445 VRCRD 449
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 322 NVIMRWS**APDXDAWCVWQASGYCSTCSHWT 417
NV+ RW P AWC + S + CS W+
Sbjct: 342 NVLGRWGH-GPVPGAWCSGRKSWFSDPCSQWS 372
>06_01_0746 + 5580755-5582119
Length = 454
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 389 PEACQTHHASXSGAYQLQRMITFY*CG*RGKGEVSCVY 276
P A TH A A L R + F CG R G+ SCVY
Sbjct: 135 PAASSTHAALPCDA-PLCRALPFTSCGGRSWGDRSCVY 171
>07_01_0559 +
4151054-4151178,4151306-4153018,4153121-4153412,
4154327-4154636,4155041-4155261
Length = 886
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 311 G*RGKGEVSCVYGTD--PFRSLYEVLIAADTSC 219
G R E SC Y + P +L E+L+ A+T C
Sbjct: 231 GMRAVSEFSCTYSLEDLPLETLLEILVFANTFC 263
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -2
Query: 423 MXCPMRTRATVP*GLPNAPRIXVWSLSAPAH 331
+ CP+ + + VP LP++P ++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,472,348
Number of Sequences: 37544
Number of extensions: 207386
Number of successful extensions: 418
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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