Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0892
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    29   0.52 
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   2.7  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   4.8  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   6.3  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   8.4  
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    25   8.4  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 38  VQTTVKKIHAYSHHLFALRTL 100
           ++  VKKIH ++H +F LRTL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = +2

Query: 17  RTVLWYVVQTTV-----KKIHAYSHHLFAL 91
           R + WY + TT+     + I+AY HHLF +
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFIM 138


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 67  IQPPLVCPKNTEHRARHAGKCACCPACVTLLGEG 168
           + PPL  PK+  HR   AG+       + LL +G
Sbjct: 334 LDPPLD-PKSFSHRCGRAGRAGRAGVAIVLLNDG 366


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 594 FFITXKSFL-INWSNPSLQIAQLLETYENI*LYSTSYIH 481
           FF+     L IN+ NP+ ++  +L+ + NI   S +  H
Sbjct: 194 FFLASLGVLRINYENPNFELLPILKLFANIVANSVALTH 232


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 214  RRGFRLVPSNKSCKLHLHQVKLHKRDNKHTFQRVWRD 104
            +R  +L   N   KLH  ++    R+ +HT Q+ + D
Sbjct: 915  KRVRKLEKVNSELKLHCFELSERLREREHTLQQTFGD 951


>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/64 (18%), Positives = 35/64 (54%)
 Frame = +3

Query: 354 DNNMHCSKYRNLKLKNMNF**TEQKRNEIVCIIQVTLSGYRDNVCNSSSIIIYSHKSLII 533
           +   H  KY+ L  +N+    T +K+N +  +++++ S  R  +  ++  +++   +++ 
Sbjct: 86  EEKSHGLKYKKLFRRNIG---TSEKKNRLPDLLELSSSPRRLPILFAAFCLLWGTCAVLA 142

Query: 534 VQFG 545
           +Q+G
Sbjct: 143 IQYG 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,563
Number of Sequences: 5004
Number of extensions: 49616
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)