Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0888
         (409 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.38 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   4.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   8.1  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 243 PSAANVTSTRSPRDSRP*KPADIFAWKLFQHSENCSSD--AIDSDDSTWN 100
           P+ A+ T T S   S    PA I ++ L QH   CSS    + + +ST N
Sbjct: 203 PTIASATYTNSANSSIW-SPASIDSFTLEQHRSWCSSSQPVLSTTNSTTN 251


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 41  SYIFFKCFSYRNYKYK 88
           SY+ F  F  RN +YK
Sbjct: 145 SYLLFDYFVQRNQEYK 160


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +2

Query: 77  YKYKA*DRFHVESSLSMASDEQFSLCWNNFHANMSAGFH 193
           YKY A      + S+S       S  W N+ A  SA  H
Sbjct: 121 YKYSAAAPGPSDPSVSSCHQGFSSSTWCNYSAYSSASRH 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,974
Number of Sequences: 336
Number of extensions: 1983
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)