BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0888 (409 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 31 0.052 SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 24 7.9 SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 24 7.9 >SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 31.5 bits (68), Expect = 0.052 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Frame = +2 Query: 221 DVTLAAE-GXIATHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 388 D+ A + G + HK L+ S YF+ F K+ P++H I +V H A +L+++Y Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223 >SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 24.2 bits (50), Expect = 7.9 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +2 Query: 224 VTLAAEGXIATHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHS 358 V A + +A+ K V + ++ TQH + LKDV HS Sbjct: 126 VANARKETVASEKRVNQLKKQLVDAETLLSSTQHQLTELKDVMHS 170 >SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schizosaccharomyces pombe|chr 2|||Manual Length = 470 Score = 24.2 bits (50), Expect = 7.9 Identities = 8/23 (34%), Positives = 16/23 (69%) Frame = -3 Query: 182 LTYLRGNCSSIVKIVRPTPLIAT 114 L+ L NC ++ + +RP PL+++ Sbjct: 291 LSTLVSNCKNLTRRLRPAPLVSS 313 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,674,132 Number of Sequences: 5004 Number of extensions: 32024 Number of successful extensions: 74 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 73 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 140222766 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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