Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0888
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.052
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    24   7.9  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    24   7.9  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.5 bits (68), Expect = 0.052
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 221 DVTLAAE-GXIATHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 388
           D+  A + G +  HK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 224 VTLAAEGXIATHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHS 358
           V  A +  +A+ K V  +          ++ TQH +  LKDV HS
Sbjct: 126 VANARKETVASEKRVNQLKKQLVDAETLLSSTQHQLTELKDVMHS 170


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 182 LTYLRGNCSSIVKIVRPTPLIAT 114
           L+ L  NC ++ + +RP PL+++
Sbjct: 291 LSTLVSNCKNLTRRLRPAPLVSS 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,132
Number of Sequences: 5004
Number of extensions: 32024
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)