Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0886
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 28 1.2
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 2.1
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 27 2.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.7
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 26 3.6
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 26 3.6
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 26 4.8
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 26 4.8
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 25 6.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 8.4
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 25 8.4
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 141 SGYFHLDFFYFAFHIPQLFLQ*NGSS 64
S +F+L++ FA+++PQ F + G +
Sbjct: 365 SSFFYLNYMLFAYYVPQYFQRIRGDN 390
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = +1
Query: 79 LQKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGF 234
+Q ++ M+GE+ E+++E+ +KR+ R+D++ +K F + S D F
Sbjct: 140 VQNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF 197
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = +1
Query: 79 LQKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGF 234
+Q ++ M+GE+ E+++E+ +KR+ R+D++ +K F + S D F
Sbjct: 140 VQNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF 197
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 258 PSFIYRFTKATVCTFKIFRFRRKNIHLFL 172
PSF+ RF+ + +F R+++IH F+
Sbjct: 970 PSFLRRFSSMITPAWLLFLLRQQDIHYFI 998
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 26.2 bits (55), Expect = 3.6
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +2
Query: 392 QRNMS*RNSWT*RISEIYRKRGGGFENANQRI------ERGI-GGNKMTLREKNEQPPEY 550
QR R SWT +++K G E+A +R +RGI G N ++EK Q PE
Sbjct: 42 QRKNPRRLSWTVLYRRMHKK-GISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100
Query: 551 R 553
R
Sbjct: 101 R 101
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 26.2 bits (55), Expect = 3.6
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +2
Query: 392 QRNMS*RNSWT*RISEIYRKRGGGFENANQRI------ERGI-GGNKMTLREKNEQPPEY 550
QR R SWT +++K G E+A +R +RGI G N ++EK Q PE
Sbjct: 42 QRKNPRRLSWTVLYRRMHKK-GISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100
Query: 551 R 553
R
Sbjct: 101 R 101
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 424 IKNIGNIPKKRWRL 465
++NI +IPK RW+L
Sbjct: 292 VRNIASIPKSRWKL 305
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 462 PPPLFRYISDILYVQEFL-YDIFR*VSIPNLSTSSHIFHAEFFLLQ 328
PPP ++ + D+ VQE + D++R + LS H ++F Q
Sbjct: 105 PPPSYQELEDVYIVQELMETDLYRVIRSQPLSDD----HCQYFTYQ 146
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 268 DLSSELYLQIHQSHCLYFQDI 206
D+ E YL+I + CL+ QD+
Sbjct: 92 DMPKENYLKIFSNQCLFTQDV 112
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 263 LFRALFTDSPKPLSVLSRYSDSG 195
LFR + + PKPL+VL Y G
Sbjct: 497 LFRHILDNPPKPLTVLDIYFQIG 519
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 94 GDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEY 210
G EGE E + ++AA++RD +V + M V E EY
Sbjct: 412 GMEEGEFSEAREDLAALERDYEEV-GQDSMEVDYMEEEY 449
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,114
Number of Sequences: 5004
Number of extensions: 43341
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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