Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0886
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0301 + 4016588-4016627,4016715-4018837                           32   0.40 
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090...    29   3.7  
02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087     27   8.6  

>04_01_0301 + 4016588-4016627,4016715-4018837
          Length = 720

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 11/40 (27%), Positives = 28/40 (70%)
 Frame = +1

Query: 37  IQSEDVEITGGSILLQKQLGDMEGEVKEIQMEIAAIKRDR 156
           +Q+++ E+    + ++++ G  E EVK++QME++A+  ++
Sbjct: 207 VQAKNDELLSNVLAIKEKYGQSEAEVKKLQMELSALVMEK 246


>09_06_0107 +
           20907560-20908491,20908511-20908625,20908967-20909058,
           20909293-20909556,20910714-20911494
          Length = 727

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 96  GYGRRSKRNPDGNSRYKT*PIRCDDEETDECFYAGIGIS 212
           GYG  S+++P  + R K   +RC  +E    +   IG++
Sbjct: 639 GYGDMSRKSPVSDKRAKVEALRCRADEEKSKYEKSIGVT 677


>02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087
          Length = 790

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +3

Query: 93  GGYGRRSKRNPDGNSRYKT*PIRCDDEETDECFYAGIGIS*KYRQWLW*ICK*SSEERSC 272
           GG G RS +N    +      I  +  + D     GI IS    +W+  +CK   ++   
Sbjct: 351 GGQGLRSPKNAHSEA------ISSEKNDKDTVLENGISISNGQPEWVQDMCKLVMQKHET 404

Query: 273 NLTQITKLREELIRA 317
           +   I  + EE+ RA
Sbjct: 405 SGENIDTILEEITRA 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,214,441
Number of Sequences: 37544
Number of extensions: 263617
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)