BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0885 (598 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0) 101 3e-22 SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006 SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7 SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7 >SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0) Length = 89 Score = 101 bits (243), Expect = 3e-22 Identities = 46/53 (86%), Positives = 51/53 (96%) Frame = +3 Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 254 M +RKAVIKNADM+E+MQ DA++CATQALEKFNIEKDIAAFIKKEFDKKYNPT Sbjct: 1 MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPT 53 Score = 79.8 bits (188), Expect = 2e-15 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = +2 Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 361 HCIVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG Sbjct: 55 HCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89 >SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 560 Score = 37.9 bits (84), Expect = 0.006 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Frame = +3 Query: 114 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAA-FIKKEFDKKYNPTGIASWVVIL 281 +I+ +DM++EM+ +A++ A EKF+ + AA IK+ DKK+ ASW ++ Sbjct: 26 LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFG----ASWHAVV 78 Score = 35.9 bits (79), Expect = 0.025 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVAILL 349 H +VG FG +THE R+ +Y + G+ +L Sbjct: 75 HAVVGEGFGFEITHEVRNLLYMFFGKYTTIL 105 >SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2353 Score = 27.5 bits (58), Expect = 8.7 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 400 RTQYYQMDSLCRFSCEARGCG 462 RT + +SLCR SC ARG G Sbjct: 686 RTTAFLTESLCRRSCTARGGG 706 >SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 802 Score = 27.5 bits (58), Expect = 8.7 Identities = 13/47 (27%), Positives = 20/47 (42%) Frame = -1 Query: 355 LKEQYSHLSQVEVDEVASLVCHIRAKITTHDAMPVGLYFLSNSFLMN 215 L +++ L E ++A +CH TT + P F N F N Sbjct: 174 LCQEFEKLDVQEKTDIAQGICHKSGNKTTDNGAPENHQFFGNGFNQN 220 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,064,926 Number of Sequences: 59808 Number of extensions: 362670 Number of successful extensions: 950 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 812 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 949 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1439498375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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