Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0880
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   3.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.0  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   7.9  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 276 PSFTVKYMHSNAN 314
           P FT KY H N N
Sbjct: 58  PGFTGKYCHENIN 70


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 179 SPSCRSDGIPTPECSSANPRLENSS 253
           SPS     +PT   S++NP   + S
Sbjct: 76  SPSSTPSSLPTQRTSTSNPTYSSRS 100


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -3

Query: 335  EACKVFHICIRVHVLHCKTWPQCRQTP 255
            E+C  F++C+  H++     P     P
Sbjct: 1216 ESCSSFYVCVNGHLVPQNCAPGLHYNP 1242


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 516 CKGIPDFWYNIFRNVSMLSE 575
           C+G   F+   + N+S +SE
Sbjct: 22  CEGCKSFFGRTYNNISSISE 41


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 440 AVQNAAITEGEEKKDDK 490
           AVQ +++TEG+  K  K
Sbjct: 65  AVQGSSLTEGKRSKRSK 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,372
Number of Sequences: 336
Number of extensions: 2356
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)