Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0880
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    35   0.010
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    32   0.055
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.8  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   8.4  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 519 KGIPDFWYNIFRNVSMLSEMMQEHDE 596
           KGIP+FW    +NV  LSEM+   DE
Sbjct: 162 KGIPEFWLTAMKNVLSLSEMITPEDE 187


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 32.3 bits (70), Expect = 0.055
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 519 KGIPDFWYNIFRNVSMLSEMMQEHDE 596
           KGIP+FW     NV ++ EM+   DE
Sbjct: 164 KGIPEFWLTCLHNVFLVGEMITPEDE 189


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 126  HLLKSGVTRNEMIAAITNRLHAEAMASLP 212
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -1

Query: 484 ILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 368
           ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 672 ILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,250
Number of Sequences: 5004
Number of extensions: 39013
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)