Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0880
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical pr... 31 0.47
U20864-10|AAK68355.1| 596|Caenorhabditis elegans C. elegans ADA... 25 6.5
U20864-11|AAV58867.1| 583|Caenorhabditis elegans C. elegans ADA... 25 6.5
Z81453-5|CAB03796.1| 294|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical pr... 27 7.7
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin ... 27 7.7
>U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical
protein D2096.8 protein.
Length = 316
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +2
Query: 239 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
L+N + + IE+ FY VH R IV G EP ++ P +
Sbjct: 33 LKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPILEGL 92
Query: 419 EEEELARAVQNA 454
E ++LA + A
Sbjct: 93 EGDQLAELYKAA 104
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 519 KGIPDFWYNIFRNVSMLSEMMQEHD 593
KGI DFW R +++E ++EHD
Sbjct: 111 KGIKDFWLTALRTHDLVAEAIEEHD 135
>U20864-10|AAK68355.1| 596|Caenorhabditis elegans C. elegans ADA-2
protein, isoform a protein.
Length = 596
Score = 24.6 bits (51), Expect(2) = 6.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 158 NDSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVD 268
ND+ S SCR G P+P+ + SS + D
Sbjct: 257 NDNSPGPSSSCRKKGPPSPKRRKTTRVMRESSSDSDD 293
Score = 21.4 bits (43), Expect(2) = 6.5
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +2
Query: 374 EPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDK 490
+ +D + + +TEEE+ A + A + E+++++K
Sbjct: 297 QASDKDTYHGMERETEEEDPPSAFETAQEFDTEDEEEEK 335
>U20864-11|AAV58867.1| 583|Caenorhabditis elegans C. elegans ADA-2
protein, isoform b protein.
Length = 583
Score = 24.6 bits (51), Expect(2) = 6.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 158 NDSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVD 268
ND+ S SCR G P+P+ + SS + D
Sbjct: 244 NDNSPGPSSSCRKKGPPSPKRRKTTRVMRESSSDSDD 280
Score = 21.4 bits (43), Expect(2) = 6.5
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +2
Query: 374 EPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDK 490
+ +D + + +TEEE+ A + A + E+++++K
Sbjct: 284 QASDKDTYHGMERETEEEDPPSAFETAQEFDTEDEEEEK 322
>Z81453-5|CAB03796.1| 294|Caenorhabditis elegans Hypothetical
protein B0250.8 protein.
Length = 294
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/71 (16%), Positives = 31/71 (43%)
Frame = +2
Query: 368 TYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEXXXXXXXXXXXLLVQH 547
T + NDDE W+ + +E+ R ++ + +G++ ++ ++ +
Sbjct: 37 TNQLNDDEMGRTWKAEVQEQ---RVIRGRTLVKGQQDAEEAEVKAIRENATRKQPATTEQ 93
Query: 548 IQECLNAQRND 580
++E N + D
Sbjct: 94 VEEVENQKEKD 104
>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
protein T24A11.1b protein.
Length = 1006
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 404 WRDDTEEEELARAVQNAAITEGEEKK 481
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361
>Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical
protein T24A11.1a protein.
Length = 938
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 404 WRDDTEEEELARAVQNAAITEGEEKK 481
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 333 WRNPTDEKIIEEAVKASRI-EGEEKK 357
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 304 ECMYFTVKLGLNVDKLL 254
EC++ + K GLNVDK+L
Sbjct: 188 ECLHISAKSGLNVDKVL 204
>AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin
homologous protein 1 protein.
Length = 930
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 404 WRDDTEEEELARAVQNAAITEGEEKK 481
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,266,335
Number of Sequences: 27780
Number of extensions: 229695
Number of successful extensions: 679
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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