Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0879
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               78   7e-15
SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11)                  51   9e-07
SB_52117| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_45731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_12257| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_43176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_51591| Best HMM Match : HECT (HMM E-Value=0)                        28   7.5  
SB_28695| Best HMM Match : Ras (HMM E-Value=0)                         28   7.5  
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)                      28   7.5  
SB_41409| Best HMM Match : zf-C2H2 (HMM E-Value=2)                     27   9.9  

>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 50/133 (37%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
 Frame = +3

Query: 255 NVTHLCIRELEKKGKVTSIVTQNVDRLHHKAGSEKVIELHGTSYLVQCLKCPYEIDRHEL 434
           N  H  + +LE  G V S+VTQNVD LH KAGS+ VIELHG S+ V CL C     R  L
Sbjct: 232 NEAHYALAKLETLGSVHSLVTQNVDALHTKAGSKNVIELHGCSHRVICLGCNQITARTAL 291

Query: 435 QEILTENNPDMESSFSMIRPDGDVDCRGNK*KNSELHSAPSVKGL*NQI*CFLVTMYP-- 608
           Q+ + E NPD  +      PDGD        K+ ++    +  G+      F     P  
Sbjct: 292 QKRMIEFNPDWHAVGQGQAPDGDTFLTSEAVKDFKVPPCKACGGILKPEVVFFGDSVPKQ 351

Query: 609 --NIAWNKSERSD 641
             NIA+++   SD
Sbjct: 352 IVNIAYDRLAESD 364



 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 32/52 (61%), Positives = 39/52 (75%)
 Frame = +1

Query: 100 GIPDYRSEDVGLYARSNHKPIQYQEFVKYPKVRQRYWARNYIGWPRFSCVQP 255
           GI DYRSE  GLYA +N +P++YQ F+K   +RQRYWARNY+GWP F   QP
Sbjct: 180 GIRDYRSEGKGLYAITNDRPMEYQVFLKSAVMRQRYWARNYVGWPEFGSRQP 231


>SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11)
          Length = 813

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
 Frame = +3

Query: 249 ATNVTHLCIRELEKKGKVTSIVTQNVDRLHHKAG--SEKVIELHGTSYLVQCLKCPYEID 422
           A  +TH+ I +L+++G V  +++QNVD LH K+G    K+ ELHG  ++ +C KC  E  
Sbjct: 230 APTLTHMAIVKLQEEGLVHYVISQNVDGLHLKSGYPRSKLSELHGNMFVEKCDKCNKEYV 289

Query: 423 R 425
           R
Sbjct: 290 R 290


>SB_52117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +2

Query: 563 GPLKPDIVFFGDNVPK 610
           G +KPD+VFFG+++PK
Sbjct: 243 GVIKPDVVFFGEDLPK 258


>SB_45731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +3

Query: 339 HKAGSEKVIELHGTSYLVQCLKCPYEIDRHELQEILTENNPD---MESSFSMIRPDGDVD 509
           H  GS  +IE++G      CL  P     H+      +++ D   ++SS  M+ P  D D
Sbjct: 193 HMRGSNNIIEINGLGRPGDCLPVPTNTINHDSDYEDDDDDDDDLSVQSSSDMLPPHLDAD 252

Query: 510 CR 515
            R
Sbjct: 253 FR 254


>SB_12257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +3

Query: 279 ELEKKGKVTSIVTQNVDRLHHKAGSEKVIELHGTSYLVQCLKCPYEIDRHELQEILTENN 458
           +LEK G + + V  N+          K  ELH  + + Q L+CP ++ + +   I  +N 
Sbjct: 6   QLEKSGLLITDVVTNITTTT-LIPDRKGWELHRLTAITQLLRCPIKLAKIDKPPIQRQNT 64

Query: 459 PDMESSFSMIR 491
                SF + R
Sbjct: 65  LKKYLSFQLNR 75


>SB_43176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 6/28 (21%)
 Frame = +2

Query: 542 PLCPKC----EGP--LKPDIVFFGDNVP 607
           P+C  C    E P  +KPDIVFFG+++P
Sbjct: 182 PVCSTCSPDEEFPSIMKPDIVFFGESLP 209


>SB_51591| Best HMM Match : HECT (HMM E-Value=0)
          Length = 694

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = +3

Query: 300 VTSIVTQNVDRLHHKAGSEKVIELHGTSYLVQCLKCPYEIDRHELQEILTENNPDMESSF 479
           VTS+V      L ++   E V E    S L+  +    E+D+ EL   LT  N D E+  
Sbjct: 232 VTSLVVAGTSSLGNRQAVEHVTENCSDSELMAAVMMEQEVDQ-ELVSDLTPANRDNETID 290

Query: 480 SMIRPDGD 503
           S    DGD
Sbjct: 291 SQ-ENDGD 297


>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1058

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 150 SQTYTVSRICEVSESKAKVLGKKLYRLAEIQLCATNVTHLCIRELEKKGKVTSIVTQNVD 329
           SQT TVSR  E+   K  VLGK  +    + L  T    + ++++E          +  +
Sbjct: 164 SQTSTVSRGEEIEWQKGNVLGKGAFGTVFLGLVNTGEL-IAVKQVELHPNNVDAAERQYE 222

Query: 330 RLHHKAGSEKVIELHG-TSYLVQCL 401
           +L  + G  K ++      Y+  C+
Sbjct: 223 KLQEEVGLLKSLKHKNIVQYIGTCM 247


>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 697

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 597 SPKNTISGFKGPSHLGQSGARNFSTCSLDNQHRHP 493
           S  N  +GF GP HL   G+ N ++CS  +Q + P
Sbjct: 501 SATNISNGF-GPRHLTPMGSLNQASCSTPHQFQPP 534


>SB_41409| Best HMM Match : zf-C2H2 (HMM E-Value=2)
          Length = 96

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 611 IWVHCHQKTLYLVSKALHTWGRVELGIFLL 522
           +W HC Q   + +SK    +G++ + +FL+
Sbjct: 47  VWAHCDQGHGFDISKVKQKFGKITIVMFLI 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,505,894
Number of Sequences: 59808
Number of extensions: 494220
Number of successful extensions: 1419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)