Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0870
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   1.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   1.9  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   2.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   3.3  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    26   4.3  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   7.5  
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    25   7.5  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   7.5  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   7.5  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   7.5  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    25   9.9  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 286  PLQPREQLAVHDAMAXARQQLQATELSDAALARCIES 396
            P+   EQL VHD +      L+++E   A   RC+ S
Sbjct: 1760 PILDSEQLVVHDFLEELFSSLKSSEEDFALRTRCVTS 1796


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 113  LAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEW 229
            L  + I  S ED+    ++C S  M KLR+T     + W
Sbjct: 1489 LVQSAIRESSEDAIALAVDCDSEAMEKLRSTTTLDEESW 1527


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/95 (20%), Positives = 44/95 (46%)
 Frame = +1

Query: 367 DAALARCIESSDSPFPHTDPDLLLLKATSAASMQCLLQXLGRAASXAEYATLTVSFKHSD 546
           +A+L  C+ S+D         L + + T A  ++   + +       EY++L+    HS+
Sbjct: 388 EASLLYCLPSTDFQPLFVSEKLSIQEVTYAHCVRIFCEHVMNKLGP-EYSSLSAILDHSN 446

Query: 547 NEH*DLTQVFIVFFDVFNSFIKTRLPERVMRHNDL 651
           N H ++ +          +F +T++ + +M++  L
Sbjct: 447 NIHAEILETIKRRLSTL-AFTRTKIHDTIMQYPGL 480


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +1

Query: 289 LQPREQLAVHDAMAXARQQLQATELSDAALARCIESSDSPFPHTDPDLLLLKATSAASMQ 468
           L     L  H +   + + L+  ELS       + +S  P  + D  +LLL     A   
Sbjct: 612 LHSLSHLLHHPSTKRSHKMLEGKELSQELEDLSLHNSPDPIIYKDELVLLLPPREIAKQL 671

Query: 469 CLLQ 480
           C+L+
Sbjct: 672 CILE 675


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 119 AAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAGY 259
           +AV    ++  KTF +   +  +++L AT     +EWV  LR+  GY
Sbjct: 64  SAVAYYKEKSPKTFFLYL-NEKIIRLIATSNEDAEEWVHVLRSTTGY 109


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 382 RCIESSDSPFPHTDPDLLLLKATSAASMQCLLQXLGRAASXAEYATLTVSFKHS--DNEH 555
           RCI+ S +P P T      LK  S +  Q  +Q L   +S  + A       HS  D EH
Sbjct: 48  RCIQGSFTPSPSTSFSYPFLKGKSDSPWQA-IQLLDFKSSGQQRAAYYSERYHSFRDKEH 106


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 163 GEGLGVFVAWAYHCCS 116
           G  + VF AWA +CCS
Sbjct: 138 GAAVRVFPAWAAYCCS 153


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 128 ICPSDEDSKTFTINCASGDML 190
           +CPS   S  F++NC +G M+
Sbjct: 62  LCPSLVGSMAFSMNCGAGGMV 82


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 295 AAGAGWPPSXWCVSSNGPEPVDPLLARAG 209
           A G  +P   W +  + PE VD  + R G
Sbjct: 346 ARGLDFPAVDWVIQLDAPEDVDTYIHRVG 374


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 197 RATDARARQEWVDGLRAIAGY 259
           R  D  A +EW + L+A+AG+
Sbjct: 88  RTEDDIANEEWEENLKAVAGF 108


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 198 ELPTPARARSGSTGSGPLLD 257
           ELP+ +R R+ S G+G LLD
Sbjct: 178 ELPSESRLRTVSLGAGVLLD 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,399
Number of Sequences: 5004
Number of extensions: 42246
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)