Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0870
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0226 - 18420293-18420697 33 0.21
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 33 0.21
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 32 0.48
12_02_0230 + 15973390-15974645,16002878-16003097 31 1.1
05_05_0060 - 22015440-22015481,22015572-22015709,22016704-220167... 30 1.5
09_04_0005 + 13612060-13612291,13612381-13612510,13612726-136129... 29 2.6
08_01_0756 - 7161089-7161452,7161589-7161995 29 2.6
07_01_0323 - 2264356-2264650,2265519-2266294 29 2.6
12_02_0528 + 20059613-20061472 28 5.9
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340... 28 5.9
07_03_1616 - 28167872-28168303 28 5.9
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 28 7.8
06_03_0365 + 19918003-19918401 28 7.8
04_04_0825 + 28443961-28444099,28444527-28444603,28444710-284447... 28 7.8
04_04_0169 + 23266110-23266439,23267208-23267288,23267399-232675... 28 7.8
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 28 7.8
02_02_0224 - 8033098-8034552 28 7.8
01_05_0048 - 17561963-17563585 28 7.8
>06_03_0226 - 18420293-18420697
Length = 134
Score = 33.1 bits (72), Expect = 0.21
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = -2
Query: 358 RSLVAAAWPTP----WRRGPRAALSAAGAGWPPSXWCVSSNGPEPVDPLLARAGVGSSQL 191
R + AAA PT WRRGPR A SAAG G V E + + G S++
Sbjct: 36 RVVAAAATPTTSTCGWRRGPRPAQSAAGDGVAAGEGDVYVEELEMMKMMGIPVGFDSTKG 95
Query: 190 QHVAGRAVYG 161
+HV V G
Sbjct: 96 KHVPDADVSG 105
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = -2
Query: 280 WPPSXWCVSSNGPEPVDPLLARAGVGSSQLQHVAGRAVYGEGLGVFVAWAYHC 122
W PS WC P P RAG+ AG + G+ V W C
Sbjct: 160 WSPSRWCCPRGSRIPRSPWQIRAGIDKQGAAADAGELLSGQVKAVRKPWRSRC 212
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 334 PTPWRRGPRAALSAAGAGWPPSXWCVSSNGPEPVD--PLLARAGVG 203
PTP RR P AA +AA A PP + VSS P P L RA G
Sbjct: 20 PTPRRRLPFAAAAAAAAA-PPRPFLVSSPPPPPAPRARLARRAAAG 64
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 79 TAWTAGQGGGSFSCSSDMPKRRRLQDLHHKLRVRRHVEA 195
TA+T G G SC S+ P++ L L H R RR EA
Sbjct: 414 TAFTTS-GNGDLSCPSNFPRKEAL--LRHAFRARRFPEA 449
>05_05_0060 -
22015440-22015481,22015572-22015709,22016704-22016799,
22016911-22017135
Length = 166
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 91 AGQGGGSFSCSSDMPKRRRLQDLHHK 168
AG+GG +D+P+ RRL+DL K
Sbjct: 48 AGEGGAEADADADLPELRRLRDLEAK 73
>09_04_0005 +
13612060-13612291,13612381-13612510,13612726-13612926,
13613086-13613185,13613513-13613559,13613871-13613964,
13614042-13614192,13614777-13614923,13614994-13615067,
13615288-13615376,13615840-13615954,13616104-13616301
Length = 525
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 304 ALSAAGAGWPPSXWCVSSNGPEPVDPLLARA 212
A++A GA WPP V S P P P A A
Sbjct: 37 AVAALGALWPPRLVAVESRPPPPSSPASASA 67
>08_01_0756 - 7161089-7161452,7161589-7161995
Length = 256
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = -2
Query: 421 PCEGRENLKTLCSARGPRH*VRSLVAAAWPTPWRRG--PRAALSAAGAGWPPSXWC-VSS 251
PC + L A+G +RS P R G P A+ SA+ WP W ++
Sbjct: 2 PCNRHQELIRSVHAKGESQRLRSGFGRTLDWPNRPGFWPAASSSASIISWPKCGWIGLNK 61
Query: 250 NGPEPVDPLLA 218
+P+ LLA
Sbjct: 62 GSADPIWALLA 72
>07_01_0323 - 2264356-2264650,2265519-2266294
Length = 356
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -2
Query: 349 VAAAWPTPWRRGPRAALSAAGAGWPPSXWCVSSNGPEPVDPLLARAGVGS 200
VA A T WRR + + G G PP V P P L G+ S
Sbjct: 55 VAVAKETGWRRDAKITVRGRGHGNPPRALVVRPLPLLPPSPFLRNRGISS 104
>12_02_0528 + 20059613-20061472
Length = 619
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = -2
Query: 307 AALSAAGAGWP-----PSXWCVSSNGPEPVDPLLARAGVGS 200
A L A WP P+ W + G EP+ PL+ A GS
Sbjct: 25 AGLGELLAAWPSLADEPAPWYTPARGAEPLTPLMVAAVYGS 65
>09_02_0042 -
3402424-3402534,3403242-3403345,3403448-3403562,
3404344-3404391,3404519-3404608,3404819-3404893,
3405001-3405153,3405695-3405779,3408051-3408121,
3408243-3408293,3409037-3409453,3409529-3409660,
3409779-3409892,3411113-3411179,3411264-3411397,
3411486-3411701,3412627-3413418
Length = 924
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 376 LARCIESSDSPFPHTDPDLLLLKATSAASMQCLLQXLGR-AASXAEYATLTVSFKHSDNE 552
LA + SS +P PH LLL +A+ Q L R A+S A A +VS + D
Sbjct: 10 LASALLSSSAPLPHPLHRSLLLLLPAASQRLAPSQTLPRFASSSAAVAAESVSSEEVDEL 69
Query: 553 H 555
H
Sbjct: 70 H 70
>07_03_1616 - 28167872-28168303
Length = 143
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 307 AALSAAGAGWPPSXWCVSSNGPEPVDPLLAR--AGVGSSQLQHVAGRAV 167
AAL+ +GA P SS P P PLLAR + SS+L R +
Sbjct: 29 AALAGSGALLPRLDGVPSSPSPSPAPPLLARSFSATSSSRLPREFSRTL 77
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = -3
Query: 297 RLQGRVGPHHXGVYPAMALSPSTHSWRARASVALSFNMSPDAQFMVKVLESSSLGHITAA 118
R +GR G GV PAMA +P+ S +VA P + + SSS AA
Sbjct: 85 RGRGRGGGGGDGVRPAMAAAPAA-STPGPVAVAARSTPPPTPAVQIPAVASSSSAQPAAA 143
Query: 117 AK 112
A+
Sbjct: 144 AQ 145
>06_03_0365 + 19918003-19918401
Length = 132
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/78 (29%), Positives = 29/78 (37%)
Frame = -2
Query: 361 VRSLVAAAWPTPWRRGPRAALSAAGAGWPPSXWCVSSNGPEPVDPLLARAGVGSSQLQHV 182
V SL A R P A A A W S P P + G+++ +
Sbjct: 18 VSSLSVRAEADQVARAPALAPDVAAASWVQQG---SQEAAAPGRPGMGMGKNGAARWRRT 74
Query: 181 AGRAVYGEGLGVFVAWAY 128
AGR G G G AWA+
Sbjct: 75 AGRRGRGGGGGGTGAWAF 92
>04_04_0825 +
28443961-28444099,28444527-28444603,28444710-28444758,
28445283-28445367,28445506-28445755,28447053-28447373
Length = 306
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -3
Query: 201 ALSFNMSPDAQFMVKVLESSSLGH--ITAAAK*ASPLAGCPGCIVSPG 64
+LS ++ PD + M + S S ++++++ S +G GC+V+PG
Sbjct: 247 SLSLSLGPDPKCMPAIASSPSESSCILSSSSRSFSDCSGNSGCLVAPG 294
>04_04_0169 +
23266110-23266439,23267208-23267288,23267399-23267538,
23267815-23268070
Length = 268
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -3
Query: 303 LSRLQG--RVGPHHXGVYPAMA-LSPSTHSW 220
LSRL G R GPHH VY A A L P S+
Sbjct: 18 LSRLAGAARFGPHHCAVYAANAFLGPDLGSF 48
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 8 RWFAVDPETGVLSYYLYDGPGDTIQPGQPARG 103
RWFA+ GVLSYY GP + + RG
Sbjct: 106 RWFAL--HDGVLSYYKIHGPDRIVLSRETERG 135
>02_02_0224 - 8033098-8034552
Length = 484
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -2
Query: 358 RSLVAAAWPTPWR--RGPRAALSAAGAGWPPSXWCVSSNGPEPVDPLLARAGVGSSQLQH 185
R L A+W R P A + GW + VSS P PL A + ++ L
Sbjct: 345 RGLAVASWAPQVRVLAHPATAAFVSHCGWNSALESVSSGVPMIAWPLHAEQKMNAAILTE 404
Query: 184 VAGRAV 167
VAG A+
Sbjct: 405 VAGVAL 410
>01_05_0048 - 17561963-17563585
Length = 540
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 477 AVPGXCCIXSRVRHAHRLLQAFRQRTLGPNSSVYCIL 587
AV G C HA +++ R+ +GPN+ Y I+
Sbjct: 369 AVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDII 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,035,003
Number of Sequences: 37544
Number of extensions: 382830
Number of successful extensions: 1437
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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