BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0870 (671 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol bin... 40 0.001 AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 29 3.0 AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 28 6.9 >AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol binding protein (osbp)related protein 4, isoform a protein. Length = 676 Score = 40.3 bits (90), Expect = 0.001 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%) Frame = +2 Query: 2 QQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASG 181 Q RWF ++ +T L YY + + GQ RG+ L AV+ E++ FTI G Sbjct: 16 QYRWFKIENDT--LLYYT---SREKMLKGQQ-RGQIRLTGAVVGIDGENNSLFTIT-VEG 68 Query: 182 DMLKLRATDARARQEWV----DGLRAIAGY 259 ++ D R R +WV + +RA +GY Sbjct: 69 KTFHMQGRDLRERNQWVRILENSIRASSGY 98 >AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical protein Y110A7A.8 protein. Length = 504 Score = 29.1 bits (62), Expect = 3.0 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = -3 Query: 261 VYPAMALSPSTHSWRARASVALSFNMSPDAQFMVKVLESSSLGHITAAAK*ASPLAGCPG 82 V A L+ H R + + M+ A +V +L S++ H+ + A SPLA P Sbjct: 196 VMDACNLAAQLHVNRLEMHQLVEWRMALIAPNLVALLGSTTTAHLVSQAGGLSPLATMPS 255 Query: 81 CIV 73 C V Sbjct: 256 CNV 258 >AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical protein F49F1.8 protein. Length = 615 Score = 27.9 bits (59), Expect = 6.9 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +1 Query: 256 IHTXVMGANPPLQPREQLAVHDAMAXARQQLQATELSDAALAR 384 + T ++G +PPL+ ++A A + Q EL DAAL R Sbjct: 215 LETFLIGLSPPLKRLVRIASPKTTEEAFELAQTIELVDAALLR 257 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,916,176 Number of Sequences: 27780 Number of extensions: 262772 Number of successful extensions: 772 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 772 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1518563232 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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