Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0868
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0003 - 19155407-19155953,19156114-19156148                       37   0.014
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410...    31   0.92 
03_02_0497 - 8891852-8892270,8892368-8892473,8892573-8892911,889...    31   0.92 
07_01_0779 + 6020009-6020174,6022307-6022428,6022853-6022962,602...    29   2.8  
12_02_0404 - 18633355-18633783,18634215-18634232                       28   4.9  
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175...    28   6.5  
02_04_0188 - 20766093-20766449,20766526-20766624,20766717-207668...    27   8.6  

>11_06_0003 - 19155407-19155953,19156114-19156148
          Length = 193

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
 Frame = +1

Query: 40  WLVKEVSLEIESI--------ITSRDVITEI-VRDVVEARGELYRNVAEREENEQGRNEP 192
           W+ +E+S  IES         I S+ V  ++ VRD V +R E +  VAE EE E+   E 
Sbjct: 6   WIYREISY-IESYTNWSHHGEIPSKQVPNQVTVRDEVVSRDEDFMVVAEEEEEEEEEEEE 64

Query: 193 EDSITHPSAVSEEGEEXHLEDD 258
           E+         EE EE    DD
Sbjct: 65  EEEEEEEEEEEEEEEEEEPADD 86


>09_04_0075 -
           14340458-14340551,14340643-14340814,14340895-14341066,
           14341617-14341811,14341886-14342053,14342150-14342335,
           14342797-14342881,14342896-14343206,14344222-14344569
          Length = 576

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +1

Query: 28  EFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELY-RNVAEREE--NEQGRNEPED 198
           EFM WL+  +  +++S   +R +I +  +  +E   E + +++ E++E  +EQ  +   D
Sbjct: 338 EFMSWLLNTMHSKLKSRKRNRSIIHDCFQGELEVVKEFHKKHIVEKKEDGDEQNGDAGSD 397

Query: 199 SITHPSAV 222
            +T  S V
Sbjct: 398 IVTETSRV 405


>03_02_0497 -
           8891852-8892270,8892368-8892473,8892573-8892911,
           8893065-8893415
          Length = 404

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +1

Query: 79  ITSRDVITEIVRDVVEARGELYRN-------VAEREENEQGRNEPEDSITHPSAVSEEGE 237
           + S +V   +VR  + + G   RN       ++ R+ +  G   P D     +A SE  E
Sbjct: 303 VVSNEVACNVVRACLRSSGRRERNRSSPTSNLSPRQSSSSGDEAPNDGAPSAAAGSESDE 362

Query: 238 EXHLEDDK 261
           E   E+DK
Sbjct: 363 ESAAEEDK 370


>07_01_0779 +
           6020009-6020174,6022307-6022428,6022853-6022962,
           6024342-6024395,6026977-6027096,6027790-6029347
          Length = 709

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 268 ATSCHLRDXLPPPPQTRRRGE*CCPRARSSPV 173
           ATSC  RD  PPPP + ++      R RS P+
Sbjct: 604 ATSCLPRDDPPPPPTSAKKAGFLRRRRRSPPL 635


>12_02_0404 - 18633355-18633783,18634215-18634232
          Length = 148

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 148 NVAEREENEQGRNEPEDSITHPSAVSEEGEEXHLEDDKT 264
           N+ + E+N+  + E E+S +      EE EE + ED+ T
Sbjct: 101 NIYKEEDNKDKKEEAEESSSSSLKDEEEEEEENNEDEDT 139


>12_01_0234 +
           1755704-1756120,1756203-1756313,1756923-1757063,
           1757142-1757312,1757412-1757616,1757738-1757910,
           1758021-1758103,1758250-1758389,1758569-1758645,
           1758711-1758810,1759978-1760606
          Length = 748

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = +1

Query: 10  ERGVDEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNE 189
           E  V+EE + +   E  +E E +    DV+ E V +V E   E      E EE+++    
Sbjct: 30  EEEVEEEEIEYEEIEEEIEEEEVEEDEDVVEE-VEEVDEEEDE-----EEEEESDETEGV 83

Query: 190 PEDSITHPSAVSEEGEEXHL 249
            +    H   V+E+G+   L
Sbjct: 84  SKTKGVHQKDVTEKGKHAEL 103


>02_04_0188 -
           20766093-20766449,20766526-20766624,20766717-20766821,
           20769149-20769241,20769673-20769765,20770075-20770176,
           20770294-20770368,20770465-20770584
          Length = 347

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 157 EREENEQGRNEPEDSITHPSAVSEEGEEXHLEDDKTSR 270
           E EE E G+N  +D         EEGEE   ED+ T +
Sbjct: 300 EEEEQEDGKNPDDD---EGDRDEEEGEEGDSEDEYTKQ 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,016,001
Number of Sequences: 37544
Number of extensions: 226558
Number of successful extensions: 901
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)