Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0868
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4) 29 3.8
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.6
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.6
SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25) 28 6.6
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.6
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) 28 6.6
SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_23087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.6
SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.6
SB_10707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 27 8.7
SB_11005| Best HMM Match : SspH (HMM E-Value=0.85) 27 8.7
SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19) 27 8.7
SB_18571| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 124 EARGELYRNVAEREENEQGRNEPEDSITHPSAVSEEGEEXHLEDDK 261
EAR + R EREE E + + H S EEGE E +
Sbjct: 745 EARLQREREAREREERELRELQRREEEEHESLAREEGERAERESQR 790
>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 122 TTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
TT++T + +++ S SS +S +S +SSS+PLS
Sbjct: 223 TTTKTTTANNKIIILSSSSSSSSSSSSSLSSSSSSPLS 260
>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
Length = 323
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 82 TSRDVITEIVRDVVEARGELYRNVAEREENEQGRNE--PEDSITHPSAVSEEGEEXHLED 255
TSR + E + E E E EE E+G+ E E+ +T +S +E D
Sbjct: 31 TSRQITEEEEEEQTEEEEEQTEEEEEEEEKEEGKEEDGEEEVVTDERGISSSKDESDESD 90
Query: 256 D 258
+
Sbjct: 91 E 91
>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1273
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 585 DEIPPWFLKEYALEIGPILTS 605
>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 864
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 307 DEIPPWFLKEYALEIGPILTS 327
>SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25)
Length = 863
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 424 DEIPPWFLKEYALEIGPILTS 444
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 97 DEIPPWFLKEYALEIGPILTS 117
>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
Length = 1241
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 463 DEIPPWFLKEYALEIGPILTS 483
>SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 719
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 326 DEIPPWFLKEYALEIGPILTS 346
>SB_23087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQG 36
S P+ ST+SRT + + ++DTSFT++G
Sbjct: 39 SIPMTSTSSRTHAAHSMATRSATQTTADTSFTTEG 73
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 182 DEIPPWFLKEYALEIGPILTS 202
>SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 546
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 115 DEIPPWFLKEYALEIGPILTS 135
>SB_10707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 229 DEIPPWFLKEYALEIGPILTS 249
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 1 ERIERGVDEEFMPWLVKEVSL-EIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQ 177
+R++ VD++ E + E+E ++ S + E +R E L R V EREE
Sbjct: 266 QRLQNSVDQKAKRIQTLEDRISELEQLLASSQELLEDIRQKDEKISTLNRIVLEREEK-- 323
Query: 178 GRNEPEDSITHPSAVSEEGEEXH 246
E E + EE ++ H
Sbjct: 324 -LAELEHGVEELECAVEESQKLH 345
>SB_11005| Best HMM Match : SspH (HMM E-Value=0.85)
Length = 105
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 49 KEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNEP--EDSITHPSAV 222
+E+ E + D I E+ ++VEA E + +A+ E RNE ED + A+
Sbjct: 22 EEICSSSERAQITVDEIHEVAENLVEAIRENKQKLAKNLLREMERNETDVEDKVEWTKAI 81
Query: 223 SEEGEE 240
+E+ +E
Sbjct: 82 TEKLQE 87
>SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19)
Length = 320
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 1 ERIERGVDEEFMPWLVKEVSL-EIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQ 177
+R++ VD++ E + E+E ++ S + E +R E L R V EREE
Sbjct: 225 QRLQNSVDQKAKRIQTLEDRISELEQLLASSQELREDIRQKDEKISTLNRIVLEREEK-- 282
Query: 178 GRNEPEDSITHPSAVSEEGEEXH 246
E E + EE ++ H
Sbjct: 283 -LAELEHGVEELECAVEESQKLH 304
>SB_18571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 124 EARGELYRNVAEREENEQGRNEPEDSITHPSAVSEEGEE 240
+A GE+ + AE E+NE+ E + + + A E+ +E
Sbjct: 6 DAAGEMKESYAENEDNEEQDKESDHAAYNEEAEDEDEDE 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,882,925
Number of Sequences: 59808
Number of extensions: 253733
Number of successful extensions: 912
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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