Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0868
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC050604-1|AAH50604.1| 560|Homo sapiens radial spoke head 3 hom... 50 6e-06
AL035530-5|CAI19236.1| 322|Homo sapiens radial spokehead-like 2... 50 6e-06
AL035530-4|CAI19235.1| 418|Homo sapiens radial spokehead-like 2... 50 6e-06
AK057931-1|BAB71615.1| 560|Homo sapiens protein ( Homo sapiens ... 50 6e-06
AK057655-1|BAB71544.1| 322|Homo sapiens protein ( Homo sapiens ... 50 6e-06
AF353618-1|AAK26432.1| 418|Homo sapiens radial spoke protein 3 ... 50 6e-06
L49054-1|AAA99997.1| 268|Homo sapiens NPM-MLF1 protein. 33 0.77
BC007045-1|AAH07045.1| 268|Homo sapiens myeloid leukemia factor... 33 0.77
BC022964-1|AAH22964.1| 756|Homo sapiens chromosome 1 open readi... 31 3.1
AL022398-9|CAA18546.1| 756|Homo sapiens chromosome 1 open readi... 31 3.1
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 30 5.4
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 30 5.4
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 30 5.4
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 30 5.4
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 30 5.4
AK096889-1|BAC04885.1| 299|Homo sapiens protein ( Homo sapiens ... 30 7.2
AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein. 30 7.2
>BC050604-1|AAH50604.1| 560|Homo sapiens radial spoke head 3
homolog (Chlamydomonas) protein.
Length = 560
Score = 50.0 bits (114), Expect = 6e-06
Identities = 30/92 (32%), Positives = 46/92 (50%)
Frame = +1
Query: 7 IERGVDEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRN 186
IER ++ F+PWL+ EV +E + R V+ ++R+VVE R +Y E E+
Sbjct: 426 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMY----EHGEDTHQSP 481
Query: 187 EPEDSITHPSAVSEEGEEXHLEDDKTSRNXXL 282
EPED P A++E E + S+ L
Sbjct: 482 EPEDEPGGPGAMTESLEASEFLEQSMSQTREL 513
>AL035530-5|CAI19236.1| 322|Homo sapiens radial spokehead-like 2
protein.
Length = 322
Score = 50.0 bits (114), Expect = 6e-06
Identities = 30/92 (32%), Positives = 46/92 (50%)
Frame = +1
Query: 7 IERGVDEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRN 186
IER ++ F+PWL+ EV +E + R V+ ++R+VVE R +Y E E+
Sbjct: 188 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMY----EHGEDTHQSP 243
Query: 187 EPEDSITHPSAVSEEGEEXHLEDDKTSRNXXL 282
EPED P A++E E + S+ L
Sbjct: 244 EPEDEPGGPGAMTESLEASEFLEQSMSQTREL 275
>AL035530-4|CAI19235.1| 418|Homo sapiens radial spokehead-like 2
protein.
Length = 418
Score = 50.0 bits (114), Expect = 6e-06
Identities = 30/92 (32%), Positives = 46/92 (50%)
Frame = +1
Query: 7 IERGVDEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRN 186
IER ++ F+PWL+ EV +E + R V+ ++R+VVE R +Y E E+
Sbjct: 284 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMY----EHGEDTHQSP 339
Query: 187 EPEDSITHPSAVSEEGEEXHLEDDKTSRNXXL 282
EPED P A++E E + S+ L
Sbjct: 340 EPEDEPGGPGAMTESLEASEFLEQSMSQTREL 371
>AK057931-1|BAB71615.1| 560|Homo sapiens protein ( Homo sapiens
cDNA FLJ25202 fis, clone REC05350. ).
Length = 560
Score = 50.0 bits (114), Expect = 6e-06
Identities = 30/92 (32%), Positives = 46/92 (50%)
Frame = +1
Query: 7 IERGVDEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRN 186
IER ++ F+PWL+ EV +E + R V+ ++R+VVE R +Y E E+
Sbjct: 426 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMY----EHGEDTHQSP 481
Query: 187 EPEDSITHPSAVSEEGEEXHLEDDKTSRNXXL 282
EPED P A++E E + S+ L
Sbjct: 482 EPEDEPGGPGAMTESLEASEFLEQSMSQTREL 513
>AK057655-1|BAB71544.1| 322|Homo sapiens protein ( Homo sapiens
cDNA FLJ33093 fis, clone TRACH2000675, weakly similar to
RADIAL SPOKE PROTEIN 3. ).
Length = 322
Score = 50.0 bits (114), Expect = 6e-06
Identities = 30/92 (32%), Positives = 46/92 (50%)
Frame = +1
Query: 7 IERGVDEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRN 186
IER ++ F+PWL+ EV +E + R V+ ++R+VVE R +Y E E+
Sbjct: 188 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMY----EHGEDTHQSP 243
Query: 187 EPEDSITHPSAVSEEGEEXHLEDDKTSRNXXL 282
EPED P A++E E + S+ L
Sbjct: 244 EPEDEPGGPGAMTESLEASEFLEQSMSQTREL 275
>AF353618-1|AAK26432.1| 418|Homo sapiens radial spoke protein 3
protein.
Length = 418
Score = 50.0 bits (114), Expect = 6e-06
Identities = 30/92 (32%), Positives = 46/92 (50%)
Frame = +1
Query: 7 IERGVDEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRN 186
IER ++ F+PWL+ EV +E + R V+ ++R+VVE R +Y E E+
Sbjct: 284 IERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMY----EHGEDTHQSP 339
Query: 187 EPEDSITHPSAVSEEGEEXHLEDDKTSRNXXL 282
EPED P A++E E + S+ L
Sbjct: 340 EPEDEPGGPGAMTESLEASEFLEQSMSQTREL 371
>L49054-1|AAA99997.1| 268|Homo sapiens NPM-MLF1 protein.
Length = 268
Score = 33.1 bits (72), Expect = 0.77
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 70 ESIITSRDVITEIVRDVVEARGELYRNVAE---REENEQGRNEPEDSITHPSAVS 225
ESI+ R+ + +++R E G ++++ R N +G N+ EDS+TH S
Sbjct: 17 ESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDGEDSLTHTDVSS 71
>BC007045-1|AAH07045.1| 268|Homo sapiens myeloid leukemia factor 1
protein.
Length = 268
Score = 33.1 bits (72), Expect = 0.77
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 70 ESIITSRDVITEIVRDVVEARGELYRNVAE---REENEQGRNEPEDSITHPSAVS 225
ESI+ R+ + +++R E G ++++ R N +G N+ EDS+TH S
Sbjct: 17 ESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDGEDSLTHTDVSS 71
>BC022964-1|AAH22964.1| 756|Homo sapiens chromosome 1 open reading
frame 107 protein.
Length = 756
Score = 31.1 bits (67), Expect = 3.1
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 145 RNVAEREENEQGRNEPEDSITHPSAVSEE--GEEXHLEDDKTSRNXXLP 285
+NV+E EE ++ E EDSI + +++E G + +E++ + + P
Sbjct: 80 KNVSEEEEEDEEEEEEEDSIVDDAEMNDEDGGSDVSVEEEMAAESTESP 128
>AL022398-9|CAA18546.1| 756|Homo sapiens chromosome 1 open reading
frame 107 protein.
Length = 756
Score = 31.1 bits (67), Expect = 3.1
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 145 RNVAEREENEQGRNEPEDSITHPSAVSEE--GEEXHLEDDKTSRNXXLP 285
+NV+E EE ++ E EDSI + +++E G + +E++ + + P
Sbjct: 80 KNVSEEEEEDEEEEEEEDSIVDDAEMNDEDGGSDVSVEEEMAAESTESP 128
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
SRm300 protein.
Length = 2296
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 164 RRMNRGGTSP----RTASLTPPPCLRRGRKXISKMTRRR 268
RR +R T P R+ S TPP RR R S +TRRR
Sbjct: 1943 RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRR 1981
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 164 RRMNRGGTSP----RTASLTPPPCLRRGRKXISKMTRRR 268
RR +R T P R+ S TPP RR R S +TRRR
Sbjct: 975 RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRR 1013
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 164 RRMNRGGTSP----RTASLTPPPCLRRGRKXISKMTRRR 268
RR +R T P R+ S TPP RR R S +TRRR
Sbjct: 1943 RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRR 1981
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
protein.
Length = 1275
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 164 RRMNRGGTSP----RTASLTPPPCLRRGRKXISKMTRRR 268
RR +R T P R+ S TPP RR R S +TRRR
Sbjct: 466 RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRR 504
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 164 RRMNRGGTSP----RTASLTPPPCLRRGRKXISKMTRRR 268
RR +R T P R+ S TPP RR R S +TRRR
Sbjct: 1991 RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRR 2029
>AK096889-1|BAC04885.1| 299|Homo sapiens protein ( Homo sapiens
cDNA FLJ39570 fis, clone SKMUS2001850, highly similar to
Homo sapiens t(3;5)(q25.1;p34) fusion gene NPM-MLF1
mRNA. ).
Length = 299
Score = 29.9 bits (64), Expect = 7.2
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 70 ESIITSRDVITEIVRDVVEARGELYRNVAE---REENEQGRNEPEDSITHPS 216
ESI+ R+ + +++R E G ++++ R N +G N+ EDS+T S
Sbjct: 33 ESILAHRENMRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDGEDSLTATS 84
>AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein.
Length = 708
Score = 29.9 bits (64), Expect = 7.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 122 WKPEENCTETLLRERRMNRGGTSPRTASLTPPPCLRRGRKXISKMTRRR 268
W+ ++ C RE RG ++ LTPPP RG+K K TR++
Sbjct: 174 WERDKTC-----RELGATRGHSASHDKDLTPPPSS-RGKKKKKKSTRKK 216
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,286,346
Number of Sequences: 237096
Number of extensions: 1280719
Number of successful extensions: 3883
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3883
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -