Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0868
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X70834-1|CAA50182.1| 592|Caenorhabditis elegans Cytoplasmic int... 29 1.9
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z73423-7|CAL36497.1| 567|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z73423-6|CAD44093.1| 575|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z73423-5|CAA97777.3| 575|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z50045-6|CAL36494.1| 567|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z50045-5|CAD44129.1| 575|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z50045-4|CAA90365.3| 575|Caenorhabditis elegans Hypothetical pr... 27 7.7
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 27 7.7
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 27 7.7
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 27 7.7
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 27 7.7
AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain fami... 27 7.7
>X70834-1|CAA50182.1| 592|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 592
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/74 (17%), Positives = 38/74 (51%)
Frame = +1
Query: 46 VKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVS 225
++++ E ++++ ++ + + ++A +YR + E EEN G + + + A++
Sbjct: 399 IRKMREECQALMVELQMLLD-TKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVVKTHAIT 457
Query: 226 EEGEEXHLEDDKTS 267
+E E + +T+
Sbjct: 458 QETETMRVVKGETA 471
>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical
protein C14C10.4 protein.
Length = 1058
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 115 DVVEARGELYRNVAEREENEQGR 183
+VV R R +AERE+NEQGR
Sbjct: 263 NVVRLRCAAARAIAEREKNEQGR 285
>Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical
protein T19C4.2 protein.
Length = 313
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -1
Query: 412 INLIEFNNTSQIFYSS 365
INL+ F NTSQ+FYS+
Sbjct: 133 INLLPFINTSQLFYST 148
>Z73423-7|CAL36497.1| 567|Caenorhabditis elegans Hypothetical
protein F38B2.1c protein.
Length = 567
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/62 (17%), Positives = 33/62 (53%)
Frame = +1
Query: 46 VKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVS 225
++++ E ++++ ++ + + ++A +YR + E EEN G + + + A++
Sbjct: 372 IRKMREECQALMVELQMLLD-TKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVVKTHAIT 430
Query: 226 EE 231
+E
Sbjct: 431 QE 432
>Z73423-6|CAD44093.1| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1b protein.
Length = 575
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/62 (17%), Positives = 33/62 (53%)
Frame = +1
Query: 46 VKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVS 225
++++ E ++++ ++ + + ++A +YR + E EEN G + + + A++
Sbjct: 380 IRKMREECQALMVELQMLLD-TKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVVKTHAIT 438
Query: 226 EE 231
+E
Sbjct: 439 QE 440
>Z73423-5|CAA97777.3| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1a protein.
Length = 575
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/62 (17%), Positives = 33/62 (53%)
Frame = +1
Query: 46 VKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVS 225
++++ E ++++ ++ + + ++A +YR + E EEN G + + + A++
Sbjct: 380 IRKMREECQALMVELQMLLD-TKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVVKTHAIT 438
Query: 226 EE 231
+E
Sbjct: 439 QE 440
>Z50045-6|CAL36494.1| 567|Caenorhabditis elegans Hypothetical
protein F38B2.1c protein.
Length = 567
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/62 (17%), Positives = 33/62 (53%)
Frame = +1
Query: 46 VKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVS 225
++++ E ++++ ++ + + ++A +YR + E EEN G + + + A++
Sbjct: 372 IRKMREECQALMVELQMLLD-TKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVVKTHAIT 430
Query: 226 EE 231
+E
Sbjct: 431 QE 432
>Z50045-5|CAD44129.1| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1b protein.
Length = 575
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/62 (17%), Positives = 33/62 (53%)
Frame = +1
Query: 46 VKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVS 225
++++ E ++++ ++ + + ++A +YR + E EEN G + + + A++
Sbjct: 380 IRKMREECQALMVELQMLLD-TKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVVKTHAIT 438
Query: 226 EE 231
+E
Sbjct: 439 QE 440
>Z50045-4|CAA90365.3| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1a protein.
Length = 575
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/62 (17%), Positives = 33/62 (53%)
Frame = +1
Query: 46 VKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVS 225
++++ E ++++ ++ + + ++A +YR + E EEN G + + + A++
Sbjct: 380 IRKMREECQALMVELQMLLD-TKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVVKTHAIT 438
Query: 226 EE 231
+E
Sbjct: 439 QE 440
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 112 RDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVSEEGEEXHLEDDK 261
RD+ E + + A R++ EQ R + ED+ A E E L + +
Sbjct: 262 RDIEEQERRIREDQARRQQEEQDRRDREDNARRILAQREHQEMERLREQQ 311
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 112 RDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVSEEGEEXHLEDDK 261
RD+ E + + A R++ EQ R + ED+ A E E L + +
Sbjct: 262 RDIEEQERRIREDQARRQQEEQDRRDREDNARRILAQREHQEMERLREQQ 311
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 112 RDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVSEEGEEXHLEDDK 261
RD+ E + + A R++ EQ R + ED+ A E E L + +
Sbjct: 262 RDIEEQERRIREDQARRQQEEQDRRDREDNARRILAQREHQEMERLREQQ 311
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 112 RDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVSEEGEEXHLEDDK 261
RD+ E + + A R++ EQ R + ED+ A E E L + +
Sbjct: 262 RDIEEQERRIREDQARRQQEEQDRRDREDNARRILAQREHQEMERLREQQ 311
>AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain family
protein 7 protein.
Length = 778
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 142 YRNVAEREENEQGRNEPEDSITHPSAVSEEGEEXHLEDDKTSRNXXLPXLNY 297
Y + + EE E+ EPE+ + + V EE +DD NY
Sbjct: 97 YDDSEQYEEQEEAEPEPEEQEDYSNDVEHSEEEEEEDDDDDGYTQAAANTNY 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,198,117
Number of Sequences: 27780
Number of extensions: 197021
Number of successful extensions: 707
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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