Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0868
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64170.1 68418.m08057 dentin sialophosphoprotein-related cont...    31   0.58 
At5g37630.1 68418.m04532 chromosome condensation family protein ...    31   0.58 
At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative ...    29   2.4  
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica...    28   5.4  
At2g18700.1 68415.m02178 glycosyl transferase family 20 protein ...    28   5.4  
At1g21230.1 68414.m02653 wall-associated kinase, putative simila...    28   5.4  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   7.2  
At5g24740.1 68418.m02920 expressed protein                             27   9.5  
At3g21410.1 68416.m02702 F-box family protein (FBW1) contains si...    27   9.5  

>At5g64170.1 68418.m08057 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor [Homo sapiens]
          Length = 566

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +1

Query: 43  LVKEVSLEIESIITSRDVITEI-VRDVVEARGELYRNVAEREENEQGRNEPEDSITHPSA 219
           +V ++SLE  S    + VI ++ VR  +  R  LYR     E+   G N PE        
Sbjct: 423 VVDDISLEATSFRQLQQVIEQLDVRTKLCIRDSLYRLAKSAEQRHHGGNRPEKGAGSHLV 482

Query: 220 VSEEGEEXHLEDDKTSRN 273
             E  +     D +T  N
Sbjct: 483 TGEADKYAGFMDIETDTN 500


>At5g37630.1 68418.m04532 chromosome condensation family protein
           contains pfam profile: PF04154 chromosome condensation
           protein 3, C-terminal region
          Length = 1051

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 139 LYRNVAEREENEQGRNEPEDSITHPSAVSEEG 234
           LY+     E   Q    PEDSI HP   +EEG
Sbjct: 821 LYKKETRGEPESQVNKSPEDSIQHPLNCTEEG 852


>At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative
            similar to RNA-directed RNA polymerase [Lycopersicon
            esculentum] gi|4038592|emb|CAA71421
          Length = 1133

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
 Frame = +1

Query: 133  GELYRNVAEREENEQGRNEPEDSITHPSAVSEEGEEXHLEDDKTSRNXXLPXLN----Y* 300
            G+LYR V       +   E ED++ +   + E G E  +E  K  R+     L     Y 
Sbjct: 958  GKLYRAVKSSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYY 1017

Query: 301  GPLENM*YYLXVFKINCQFFYKTNRKFG 384
            G          + K    +  + NR++G
Sbjct: 1018 GAANEEEILTGILKTKEMYLARDNRRYG 1045


>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P31244 DNA
           repair protein RAD16 {Saccharomyces cerevisiae};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 638

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -2

Query: 225 RHGGGVSDAVLGLVPPLFILLSLSNVSVQFSSGFHHVTYDFRDDVTTRDDGLD 67
           RH     +++ GLV  + + L   N+ +   +  H +  D   + TT D  +D
Sbjct: 494 RHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAID 546


>At2g18700.1 68415.m02178 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 862

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 22  DEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEAR 132
           D  F  W  KE+   +ES++T+  V+ +  + +VE +
Sbjct: 708 DHSFGSWQAKELLDHLESVLTNEPVVVKRGQHIVEVK 744


>At1g21230.1 68414.m02653 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 733

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 271 FATSCHLRDXLPPPPQTRRRGE*CCPRARSSPVHS 167
           ++T C      PPPP ++  G  CC    S P+ S
Sbjct: 138 YSTGCMSLCDTPPPPNSKCNGVGCCRTEVSIPLDS 172


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/65 (23%), Positives = 33/65 (50%)
 Frame = +1

Query: 91   DVITEIVRDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVSEEGEEXHLEDDKTSR 270
            D+++E V  + E   E Y+   E EE E+   + E ++ +   + +E +E H+ + +   
Sbjct: 1001 DIVSEAVEALKEEEEE-YKRQIELEEEER---KLEKTLEYQRRIEDEAKEKHMAEQQKKY 1056

Query: 271  NXXLP 285
            +  +P
Sbjct: 1057 SSSVP 1061


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 255  IFEMXFLPLLRHGGGVSDAVLGLVPPLFILLSLSNVSVQFSSGF 124
            +F    LP+ R+   +SD +L LV     L+ +S++   +S GF
Sbjct: 950  VFGTIILPVSRYFLNISDDLLDLVASAEDLMLVSSLFTNYSGGF 993


>At3g21410.1 68416.m02702 F-box family protein (FBW1) contains
           similarity to F-box domain IPR:001810;
          Length = 410

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 375 KIWLVLLNSMRFIYNHV 425
           K WL L N  RFIY H+
Sbjct: 63  KRWLALFNDKRFIYKHL 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,498,949
Number of Sequences: 28952
Number of extensions: 182414
Number of successful extensions: 654
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)