Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0867
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    77   1e-15
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    29   0.68 
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    26   3.6  
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    26   3.6  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   4.8  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   4.8  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   4.8  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   6.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.4  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 35/48 (72%), Positives = 42/48 (87%)
 Frame = +3

Query: 111 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 254
           AVIK  DMSE+MQQ+A+  A QA+EKF IEKDIAAFIK+EFDKK++PT
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPT 49



 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLG 331
           HCIVGRNFGS+VTHE+RHFIYFYLG
Sbjct: 51  HCIVGRNFGSFVTHESRHFIYFYLG 75


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 549 PLSXSLENRSHQHYLASSCHTLAASYLWECTTARASHEN-LQGYPSDNTASAANKKIEVM 373
           PLS  + NR H  ++ ++    A +Y  +  T  A +E  L GY     A  +  KI+V 
Sbjct: 711 PLSFDIHNREHFDFIVAAASLYAFNYGLKSETDPAIYERVLAGYNPPPFAPKSGIKIQVN 770

Query: 372 LN 367
            N
Sbjct: 771 EN 772


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 223 LMNAAMSFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCFC 74
           L N   SF + N   +      A+ C+SSL+       L    L W+C C
Sbjct: 139 LKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKC 188


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = -2

Query: 453 ARASHENLQGYPSDNTASAANKKIEVMLNGLTALKEQYSHCPR*K*MKWRVSCVTYEPKL 274
           ARA+   L+  P ++  S AN  +      +  + E Y    R +  K R+  V      
Sbjct: 174 ARANPPKLRNQPENDFISIANHSVHSNAEDINIINEDYIEIGRHRKEKGRIIDVDINKLP 233

Query: 273 RPTMQ 259
           +PT +
Sbjct: 234 KPTQE 238


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 72  KQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE 200
           +QKQ + +   RK   K   M+E+ +    +   + L K N+E
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVE 569


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 183 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 70
           ++L L + QH+   L SC ++L +L  H  CL  F++ S
Sbjct: 39  KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 409 YCVRC*QKNRSDAKWSNRS 353
           YC+RC   ++ D+ W++RS
Sbjct: 539 YCLRCVYDDKMDSLWNSRS 557


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +3

Query: 75  QKQTQD--KMCDRKAVIKNADMSEEMQQDAVDCATQALEKF 191
           +K+T +  KM   K ++K AD+S  +Q+D +   T+ LEK+
Sbjct: 521 EKKTDEPVKMRKVKKLVKVADLSVSVQEDRL--PTEVLEKY 559


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 185 LERLSCTVNSILLHLFAHVSILYDCF 108
           LE L+  +N  +  +FA++ +  DCF
Sbjct: 565 LEFLNSCINRCISRVFAYLDVCVDCF 590


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 25/83 (30%), Positives = 38/83 (45%)
 Frame = -1

Query: 337 PLSQVEVDEVASLVCHIRAKITTHDAMPVGLYFLSNSFLMNAAMSFSMLNFSSA*VAQST 158
           P  +V ++E+  L   IR  I ++   P  L+   N F      + + LNF S  ++   
Sbjct: 22  PSEKVLLEELRKLRGFIRNDIPSN-FFPQ-LFITDNGFAA-IKKAVTKLNFQSL-LSLDI 77

Query: 157 ASCCISSLMSAFFMTALRSHILS 89
             CC+  L  A   T LRS +LS
Sbjct: 78  FECCLQILGIATSYTILRSWLLS 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,695
Number of Sequences: 5004
Number of extensions: 45585
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)