Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0867
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           63   1e-10
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     52   3e-07
01_06_0783 + 31975261-31975398,31975583-31975726                       44   9e-05
02_04_0361 - 22359278-22359439,22362291-22362728                       39   0.003
01_05_0324 - 20946774-20946935,20947301-20947780                       38   0.006
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504...    32   0.40 
03_06_0490 + 34289904-34289967,34291912-34292237,34292401-342925...    29   2.1  
09_04_0584 - 18714461-18716296                                         29   2.8  
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97...    28   4.9  
03_01_0655 + 4797516-4797624,4797716-4798485,4798988-4799049,479...    28   4.9  

>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 29/49 (59%), Positives = 36/49 (73%)
 Frame = +3

Query: 108 KAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 254
           K  +K+ADM EEM+Q+A D A  A EK  +EKDIA +IKKEFDK + PT
Sbjct: 46  KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPT 94


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 26/53 (49%), Positives = 34/53 (64%)
 Frame = +3

Query: 96  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 254
           +   K  IK+A+M EEM+Q+A D    A EK  +EKDI  +I KEFDK + PT
Sbjct: 54  LAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYI-KEFDKNHGPT 105


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
 Frame = +3

Query: 96  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNP 251
           M + KA++++ DM  +MQ  A+  A +AL++F++   + IAA IKKEFD  + P
Sbjct: 1   MLEGKAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGP 54



 Score = 35.9 bits (79), Expect = 0.025
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 260 CIVGRNFGSYVTHETRHFIYFYLG 331
           C+VG +FG Y TH    FIYF LG
Sbjct: 58  CVVGASFGCYFTHSKGSFIYFKLG 81


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYF 322
           HCIVG  FGSYVTH    F+YF
Sbjct: 157 HCIVGTGFGSYVTHSVGGFLYF 178



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 72  KQKQTQDKMCDRKAVIK--NADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDK 239
           K+K+ +    +RK  ++   ADM   MQ+ AV  A  A+        K +A  +KKEFD 
Sbjct: 91  KEKEMEKGKEERKVSVRVRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDA 150

Query: 240 KYNP 251
            Y P
Sbjct: 151 TYGP 154


>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = +3

Query: 126 ADMSEEMQQDAVDCATQA---LEKFNIEKDIAAFIKKEFDKKYNPT 254
           ADMS  MQ  A  CA ++   L+KF+  + +A  +KKEFDK Y PT
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPT 169



 Score = 35.5 bits (78), Expect = 0.032
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYF 322
           HCIVG ++GS+VTH    F+YF
Sbjct: 171 HCIVGTSYGSFVTHARGCFLYF 192


>12_01_0612 -
           5044639-5044858,5045010-5045167,5045440-5045684,
           5046006-5046294,5047540-5048561,5049320-5049389
          Length = 667

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 54  EFVHLSKQKQTQDKMCDRKA-VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKE 230
           EF  L +++  +   CD  +   +N  + EE  Q  +DC  +  E+F+ E+D    IK  
Sbjct: 567 EFERLLQEELARAIECDVDSETTENCKLREEQIQRIIDCQVKDAEEFDAEQD--ELIKTH 624

Query: 231 FDKKYN 248
            +KK N
Sbjct: 625 EEKKAN 630


>03_06_0490 +
           34289904-34289967,34291912-34292237,34292401-34292536,
           34292651-34292793,34292880-34293003,34293562-34293963,
           34294121-34294176
          Length = 416

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 360 TALKEQYSHCPR*K*MKWRVSCVTYEPKLRPTMQ 259
           T L+ QYSH          + C++YE K+RP+M+
Sbjct: 321 TRLEGQYSHVGAQTVATLALECLSYEAKMRPSME 354


>09_04_0584 - 18714461-18716296
          Length = 611

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +3

Query: 6   LWKVGIESPVIKILT*EF----VHLSKQKQTQDKMCDRKAVI 119
           +WKVG+ + VIK ++  F     H+ K K  QDKM  ++++I
Sbjct: 238 VWKVGVLTGVIKHMSPNFDKIRNHVRKSKCLQDKMTAKESLI 279


>06_01_0125 +
           970746-970967,971126-971226,971897-972026,972108-972333,
           972400-972502,972519-972594,972710-973333
          Length = 493

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 75  QKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEK 188
           Q + ++K C  KA +   + S + +QD +D   Q  EK
Sbjct: 259 QHRKRNKFCGHKAAVDRLNESGKNEQDRIDDVVQMYEK 296


>03_01_0655 +
           4797516-4797624,4797716-4798485,4798988-4799049,
           4799267-4799336,4799971-4800058,4801070-4801227,
           4801316-4801459,4801561-4801689,4801797-4801964
          Length = 565

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 153 DAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTGIASWVVILAR 287
           DA+  AT  L     E++IAA I K  +    P+ IA ++V  A+
Sbjct: 477 DAIVTATDGLFDNVYEEEIAAVISKSLEAGLKPSEIAEFLVARAK 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,285,340
Number of Sequences: 37544
Number of extensions: 295548
Number of successful extensions: 747
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)