Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0867
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)               101   3e-22
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.006
SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score =  101 bits (243), Expect = 3e-22
 Identities = 46/53 (86%), Positives = 51/53 (96%)
 Frame = +3

Query: 96  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 254
           M +RKAVIKNADM+E+MQ DA++CATQALEKFNIEKDIAAFIKKEFDKKYNPT
Sbjct: 1   MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPT 53



 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 25/26 (96%), Positives = 26/26 (100%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQ 334
           HCIVGRNFGSYVTHET+HFIYFYLGQ
Sbjct: 55  HCIVGRNFGSYVTHETKHFIYFYLGQ 80


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 114 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAA-FIKKEFDKKYNPTGIASWVVIL 281
           +I+ +DM++EM+ +A++    A EKF+   + AA  IK+  DKK+     ASW  ++
Sbjct: 26  LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFG----ASWHAVV 78



 Score = 35.1 bits (77), Expect = 0.043
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQW 337
           H +VG  FG  +THE R+ +Y + G++
Sbjct: 75  HAVVGEGFGFEITHEVRNLLYMFFGKY 101


>SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/75 (28%), Positives = 29/75 (38%)
 Frame = -2

Query: 597 HCEFPIK*TV*VKTVHPLSXSLENRSHQHYLASSCHTLAASYLWECTTARASHENLQGYP 418
           H  + +K T    TVH  + +L  ++H HY     HTL        T   A H N +   
Sbjct: 36  HARYALKHT---HTVHSNTHTLCTKTHAHYALKHTHTLCTQ-----THTHAMHSNTRTLC 87

Query: 417 SDNTASAANKKIEVM 373
           +   A  A K    M
Sbjct: 88  TQTHARYALKHTHTM 102


>SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 337 PLSQVEVDEVASLVCHIRAK-ITTH 266
           P+S   +DE+AS VC ++ K I TH
Sbjct: 497 PISNENIDELASTVCRLKDKSIPTH 521


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,044,881
Number of Sequences: 59808
Number of extensions: 367712
Number of successful extensions: 936
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)