Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0856
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    28   1.0  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   1.4  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   1.8  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.4  
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    25   5.6  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   5.6  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   5.6  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   5.6  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   5.6  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    25   7.3  

>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 268 PWCVSSNGPEPVDPLLARAGVGSSXL 191
           PW  SSN   PV PL  +  +G+S +
Sbjct: 11  PWASSSNWGSPVKPLNYKTAIGNSSI 36


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 286  PLQPREQLAVHDAMAXARQQLQATELSDAALARCIES 396
            P+   EQL VHD +      L+++E   A   RC+ S
Sbjct: 1760 PILDSEQLVVHDFLEELFSSLKSSEEDFALRTRCVTS 1796


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/70 (24%), Positives = 27/70 (38%)
 Frame = +1

Query: 289 LQPREQLAVHDAMAXARQQLQATELSDAALARCIESSDSPFPHTDPDLLLLKATSAASMQ 468
           L     L  H +   + + L+  ELS       + +S  P  + D  +LLL     A   
Sbjct: 612 LHSLSHLLHHPSTKRSHKMLEGKELSQELEDLSLHNSPDPIIYKDELVLLLPPREIAKQL 671

Query: 469 CLLQCLGVLH 498
           C+L+     H
Sbjct: 672 CILEFQSFSH 681


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 325 WRRGPRAALSAAGAGWPXSPWCVSSNGPEPVDPLLARAGVGSS 197
           W+R  +A+   AGAG   +P   S+ G       L+RA   SS
Sbjct: 181 WKRMMKASSGEAGAGNVITPGVTSTTGAPSGKASLSRAASNSS 223


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 163 GEGLGVFVAWAYHCCS 116
           G  + VF AWA +CCS
Sbjct: 138 GAAVRVFPAWAAYCCS 153


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 128 ICPSDEDSKTFTINCASGDML 190
           +CPS   S  F++NC +G M+
Sbjct: 62  LCPSLVGSMAFSMNCGAGGMV 82


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 295 AAGAGWPXSPWCVSSNGPEPVDPLLARAG 209
           A G  +P   W +  + PE VD  + R G
Sbjct: 346 ARGLDFPAVDWVIQLDAPEDVDTYIHRVG 374


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 197 RATDARARQEWVDGLRAIAGY 259
           R  D  A +EW + L+A+AG+
Sbjct: 88  RTEDDIANEEWEENLKAVAGF 108


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 113  LAAAVICPSDEDSKTFTINCASGDMLKXRATDARARQEW 229
            L  + I  S ED+    ++C S  M K R+T     + W
Sbjct: 1489 LVQSAIRESSEDAIALAVDCDSEAMEKLRSTTTLDEESW 1527


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 198 ELPTPARARSGSTGSGPLLD 257
           ELP+ +R R+ S G+G LLD
Sbjct: 178 ELPSESRLRTVSLGAGVLLD 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,908
Number of Sequences: 5004
Number of extensions: 31103
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)