Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0856
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)                36   0.017
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)                 29   2.5  
SB_47491| Best HMM Match : Acyl-CoA_dh_N (HMM E-Value=0.36)            27   7.6  
SB_17660| Best HMM Match : Meleagrin (HMM E-Value=5.9)                 27   7.6  
SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.6  
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
          Length = 926

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 26/80 (32%), Positives = 37/80 (46%)
 Frame = +2

Query: 2   QQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASG 181
           Q+RWF +    G+LSYY      +  +     RG  +LA A I    ED+ +F I+    
Sbjct: 331 QRRWFVLS--NGLLSYYR-----NQAEMAHTCRGTINLAGAFI--DTEDACSFVISNGGT 381

Query: 182 DMLKXRATDARARQEWVDGL 241
            +   RA+    RQ WV  L
Sbjct: 382 QVFHLRASTEVERQRWVTAL 401


>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
 Frame = +2

Query: 2   QQRWFAVDPETGVLSYYLYDGPGDTIQP------GQPARGEAHLAAAVICPSDEDSKTFT 163
           Q+RW  +  E G+LSY+LY G   T  P       Q A       + V+C +  ++    
Sbjct: 280 QRRWCVL--EGGMLSYWLYPGDETTKAPLGSLDLSQCASSHVTTVSRVLC-ARPNTMELV 336

Query: 164 INCASGDMLK-XRATDARA-RQEWVDGL 241
           IN    + +K   A D +A +  W+D L
Sbjct: 337 INKGDNNSIKYLLAADTKADKVTWLDSL 364


>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 280 NPPLQPR-EQLAVHDAMAXARQQLQATELSDAALARCIESSDSPFPHTDPD 429
           NP L+ R E++A+   M+  ++ L     +D     C + SDS    TDP+
Sbjct: 590 NPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPN 640


>SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)
          Length = 587

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 188 LKXRATDARARQEWVDGLRAIAGYTP 265
           ++ RA + RA Q+W   ++ +AG TP
Sbjct: 138 IQGRAAETRATQQWWSAVKPVAGMTP 163


>SB_47491| Best HMM Match : Acyl-CoA_dh_N (HMM E-Value=0.36)
          Length = 431

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 294 LQGRVGPXHLGVYPAMALSPSTHSWRARASVALXFNMSPDAQFMVKVLESSSLG 133
           L G++   HLG    + L  S+    A+ SVAL    + D Q  +K ++  +LG
Sbjct: 221 LAGQMKDLHLGDVHLIELDDSSTGQDAKHSVALVVAQTRDRQHRLKPVDLRALG 274


>SB_17660| Best HMM Match : Meleagrin (HMM E-Value=5.9)
          Length = 310

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 70  RHNTAWTAGQGGGSFSCSSDMPKRRRLQDLHH 165
           RHN         GS  C  D P+RRR+   HH
Sbjct: 181 RHNNCSEYDVSYGSDECCHDHPERRRVGCSHH 212


>SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 2  QQRWFAVDPETGVLSYYLYD 61
          Q+RWF ++   GVL Y++YD
Sbjct: 21 QRRWFVLN-SAGVLEYFIYD 39


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 103 GGSFSCSSDMPKRRRLQDLHHKLRVRRHVEAE 198
           G  FSC++  P    L+DL+ + R RR VEAE
Sbjct: 671 GVRFSCNAGQPLNDTLEDLNARRRDRR-VEAE 701


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 88   TAGQGGGSFSCSSDMPK-RRRLQDLHHKLRVRRHVEAE 198
            ++GQGG + +   +M + R+  QD  HKL    H E E
Sbjct: 1268 SSGQGGANEAIIKEMEQLRQEQQDYQHKLDKLTHAEQE 1305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,223,693
Number of Sequences: 59808
Number of extensions: 283993
Number of successful extensions: 921
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)