Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0856
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol bin...    39   0.002
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    29   2.2  
U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase pr...    27   8.9  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    27   8.9  
U40952-12|AAA81745.1|  297|Caenorhabditis elegans Hypothetical p...    27   8.9  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    27   8.9  
L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase pr...    27   8.9  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    27   8.9  
AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line hel...    27   8.9  

>AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol
           binding protein (osbp)related protein 4, isoform a
           protein.
          Length = 676

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = +2

Query: 2   QQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASG 181
           Q RWF ++ +T  L YY      + +  GQ  RG+  L  AV+    E++  FTI    G
Sbjct: 16  QYRWFKIENDT--LLYYT---SREKMLKGQQ-RGQIRLTGAVVGIDGENNSLFTIT-VEG 68

Query: 182 DMLKXRATDARARQEWV----DGLRAIAGY 259
                +  D R R +WV    + +RA +GY
Sbjct: 69  KTFHMQGRDLRERNQWVRILENSIRASSGY 98


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -3

Query: 303 LSRLQG-RVGPXHLG-VYPAMALSPSTHSWRARASVALXFNMSPDAQFMVKVLESSSLGH 130
           +S  QG ++ P  L  V  A  L+   H  R      + + M+  A  +V +L S++  H
Sbjct: 180 VSTTQGVKLEPNELETVMDACNLAAQLHVNRLEMHQLVEWRMALIAPNLVALLGSTTTAH 239

Query: 129 ITAAAK*ASPLAGCPGCIV 73
           + + A   SPLA  P C V
Sbjct: 240 LVSQAGGLSPLATMPSCNV 258


>U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 530 GDGERGVRCWRCSTPRHCSRHC 465
           G GER   C+ C  P H S  C
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDC 173


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 106 GSFSCSSDMPKRRRLQDLHHKLRVRRHVEAES 201
           G  SCSS+ PKR +++ +  K+++  +  A +
Sbjct: 293 GEASCSSETPKRPKVKRIPQKVQIESNTTAST 324


>U40952-12|AAA81745.1|  297|Caenorhabditis elegans Hypothetical
           protein C03B1.1 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 521 ERGVRCWRCSTPRHCSRHCMLAADVA 444
           +RGVR WR  +P H  R+  LA  +A
Sbjct: 235 QRGVRFWRMVSPIHLPRNYQLALILA 260


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 106 GSFSCSSDMPKRRRLQDLHHKLRVRRHVEAES 201
           G  SCSS+ PKR +++ +  K+++  +  A +
Sbjct: 293 GEASCSSETPKRPKVKRIPQKVQIESNTTAST 324


>L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 530 GDGERGVRCWRCSTPRHCSRHC 465
           G GER   C+ C  P H S  C
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDC 173


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 106 GSFSCSSDMPKRRRLQDLHHKLRVRRHVEAES 201
           G  SCSS+ PKR +++ +  K+++  +  A +
Sbjct: 293 GEASCSSETPKRPKVKRIPQKVQIESNTTAST 324


>AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line
           helicase protein 1 protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 530 GDGERGVRCWRCSTPRHCSRHC 465
           G GER   C+ C  P H S  C
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDC 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,688,357
Number of Sequences: 27780
Number of extensions: 195116
Number of successful extensions: 600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)